YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30253905, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	430 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30253905, gi|....

Description	E-value	Query Range	Subject Range
TLPB_BACSU - Methyl-accepting chemotaxis protein TlpB OS=Bacillus subtilis (strain 168) GN=tlpB PE=3 SV=1 TLPB_BACSU - Methyl-accepting chemotaxis protein tlpB OS=Bacillus subtilis GN=tlpB PE=3 SV=1 gi\|221315390 - gi\|221315390\|ref\|ZP_03597195.1\| methyl-accepting chemotaxis protein [Bacillus subtilis subsp. subtil... gi\|221320307 - gi\|221320307\|ref\|ZP_03601601.1\| methyl-accepting chemotaxis protein [Bacillus subtilis subsp. subtil... gi\|221324590 - gi\|221324590\|ref\|ZP_03605884.1\| methyl-accepting chemotaxis protein [Bacillus subtilis subsp. subtil...	2.0E-48	[3..430]	[237..660]
gi\|52080553, gi\|... - gi\|52785932\|ref\|YP_091761.1\| TlpB [Bacillus licheniformis ATCC 14580], gi\|52348434\|gb\|AAU41068.1\| Tl...	5.0E-48	[3..430]	[237..660]
gi\|104780988, gi... - gi\|95109975\|emb\|CAK14680.1\| putative methyl-accepting chemotaxis transducer [Pseudomonas entomophila... gi\|95109975 - gi\|95109975\|emb\|CAK14680.1\| putative methyl-accepting chemotaxis transducer [Pseudomonas entomophila...	4.0E-47	[1..415]	[226..627]
gi\|11351169 - pir\|\|A83314 probable chemotaxis transducer PA2654 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|218891184, gi... - gi\|218891184\|ref\|YP_002440050.1\| putative chemotaxis transducer [Pseudomonas aeruginosa LESB58], gi\|... gi\|15597850, gi\|... - gi\|9948724\|gb\|AAG06042.1\|AE004694_5 probable chemotaxis transducer [Pseudomonas aeruginosa PAO1], gi... gi\|107102175 - gi\|107102175\|ref\|ZP_01366093.1\| hypothetical protein PaerPA_01003225 [Pseudomonas aeruginosa PACS2] gi\|84320624, gi\|... - gi\|84320624\|ref\|ZP_00968997.1\| COG0840: Methyl-accepting chemotaxis protein [Pseudomonas aeruginosa ... gi\|84326982, gi\|... - gi\|84326982\|ref\|ZP_00975006.1\| COG0840: Methyl-accepting chemotaxis protein [Pseudomonas aeruginosa ...	5.0E-47	[34..415]	[345..713]
gi\|116050641, gi... - gi\|32037691\|ref\|ZP_00135963.1\| COG0840: Methyl-accepting chemotaxis protein [Pseudomonas aeruginosa ...	2.0E-46	[34..415]	[345..713]
gi\|78224021, gi\|... - gi\|78224021\|ref\|YP_385768.1\| methyl-accepting chemotaxis sensory transducer [Geobacter metallireduce...	4.0E-46	[19..415]	[186..569]

Back

Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKERKAFSF GLRTQLMLFT TVLALITYST SIFFIYVIYD YFQSYVSQTA YNIIVMLLGV  60
   61 VWSGILAYGA AVFLIKPLRK LEEAARKAAE GDIREDVPLP KTDDEIKSLS VAFNMMLGNL 120
  121 RGM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.36
Match:	2f95B
Description:	M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [124-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKNIDTTFSY TYNQVQQIRK QTGEATKQAQ GVSETLAEIS SGAEQSAASI QAIVSAVDTT  60
   61 TSIASEVEEK AKQSDELSSE MVQALGHSTR VFTSLIQGIQ TLAKENEDSM QNVQKLEERM 120
  121 KQVEHIVSVV SEIASQTNLL ALNASIEAAR AGEHGRGFAV VAEEVRKLAD ESDHSARNIS 180
  181 QLLRNMQEEV QQVAMKMTEQ VKIAKEEARR GEATELILKE MSSSVMEVAD ATKQISSYMN 240
  241 EQVSHIHQTG AQTKAVAAIA EETSAGSQEV ACVTVQQSKN MVVIDQLLKD LEKQAADLKQ 300
  301 TIERFSM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.0
Match:	2ch7A
Description:	No description for 2ch7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits