YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260511, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	473 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260511, gi|....

Description	E-value	Query Range	Subject Range
gi\|51978376, gi\|... - gi\|52144907\|ref\|YP_081922.1\| Na+/H+ antiporter [Bacillus cereus E33L], gi\|51978376\|gb\|AAU19926.1\| Na... gi\|49331629, gi\|... - gi\|49480073\|ref\|YP_034660.1\| Na+/H+ antiporter [Bacillus thuringiensis serovar konkukian str. 97-27]... gi\|228834062, gi... - gi\|228925584\|ref\|ZP_04088673.1\| NhaC family sodium:proton (Na+:H+) antiporter [Bacillus thuringiensi... gi\|228913074, gi... - gi\|228913074\|ref\|ZP_04076713.1\| NhaC family sodium:proton (Na+:H+) antiporter [Bacillus thuringiensi... gi\|228827810, gi... - gi\|228931830\|ref\|ZP_04094726.1\| NhaC family sodium:proton (Na+:H+) antiporter [Bacillus thuringiensi...	2.0E-51	[1..473]	[1..473]
gi\|228751442, gi... - gi\|229009824\|ref\|ZP_04167044.1\| NhaC family sodium:proton (Na+:H+) antiporter [Bacillus mycoides DSM... gi\|229165360, gi... - gi\|229165360\|ref\|ZP_04293147.1\| NhaC family sodium:proton (Na+:H+) antiporter [Bacillus cereus AH621... gi\|228652150, gi... - gi\|229131329\|ref\|ZP_04260230.1\| NhaC family sodium:proton (Na+:H+) antiporter [Bacillus cereus BDRD-... gi\|163860528, gi... - gi\|89204762\|ref\|ZP_01183338.1\| Na+/H+ antiporter NhaC [Bacillus weihenstephanensis KBAB4], gi\|891573...	2.0E-51	[1..473]	[1..473]
gi\|228675500, gi... - gi\|229107997\|ref\|ZP_04237624.1\| NhaC family sodium:proton (Na+:H+) antiporter [Bacillus cereus Rock1... gi\|30018581, gi\|... - gi\|30018581\|ref\|NP_830212.1\| Na+/H+ antiporter NnaC [Bacillus cereus ATCC 14579], gi\|29894122\|gb\|AAP... gi\|229125824, gi... - gi\|229125824\|ref\|ZP_04254850.1\| NhaC family sodium:proton (Na+:H+) antiporter [Bacillus cereus BDRD-...	7.0E-51	[1..473]	[1..473]
gi\|19713352, gi\|... - gi\|19713352\|gb\|AAL94161.1\| NA+/H+ antiporter NHAC [Fusobacterium nucleatum subsp. nucleatum ATCC 255...	7.0E-51	[2..459]	[6..462]
gi\|34763955, gi\|... - gi\|34763955\|ref\|ZP_00144850.1\| NA+/H+ ANTIPORTER NHAC [Fusobacterium nucleatum subsp. vincentii ATCC...	8.0E-51	[2..459]	[5..461]
gi\|47569395, gi\|... - gi\|47569395\|ref\|ZP_00240077.1\| Na+/H+ antiporter NhaC [Bacillus cereus G9241], gi\|47553903\|gb\|EAL122... gi\|228776176, gi... - gi\|228983580\|ref\|ZP_04143785.1\| NhaC family sodium:proton (Na+:H+) antiporter [Bacillus thuringiensi...	8.0E-51	[1..473]	[1..473]
gi\|21398287, gi\|... - gi\|65317764\|ref\|ZP_00390723.1\| COG1757: Na+/H+ antiporter [Bacillus anthracis str. A2012], ref\|NP_65...	1.0E-50	[1..473]	[1..473]
gi\|42779516, gi\|... - gi\|42779516\|ref\|NP_976763.1\| Na+/H+ antiporter NhaC [Bacillus cereus ATCC 10987], gi\|42735432\|gb\|AAS... gi\|221238173, gi... - gi\|222094118\|ref\|YP_002528175.1\| Na+/H+ antiporter NhaC [Bacillus cereus Q1], gi\|221238173\|gb\|ACM108... gi\|217068203, gi... - gi\|217957919\|ref\|YP_002336463.1\| Na+/H+ antiporter NhaC [Bacillus cereus AH187], gi\|217068203\|gb\|ACJ... gi\|206974191, gi... - gi\|206974191\|ref\|ZP_03235108.1\| Na+/H+ antiporter NhaC [Bacillus cereus H3081.97], gi\|206747431\|gb\|E... gi\|228646257, gi... - gi\|229137181\|ref\|ZP_04265799.1\| NhaC family sodium:proton (Na+:H+) antiporter [Bacillus cereus BDRD-...	1.0E-50	[1..473]	[1..473]
tr\|D7HA88\|D7HA88... - Na+/H+ antiporter OS=Vibrio cholerae RC385 GN=VCRC385_02285 PE=4 SV=1 gi\|116215444, gi... - gi\|75822131\|ref\|ZP_00751822.1\| COG1757: Na+/H+ antiporter [Vibrio cholerae RC385], gi\|116215444\|ref\|...	1.0E-49	[2..472]	[6..475]
gi\|229355379, gi... - gi\|229507874\|ref\|ZP_04397379.1\| Na+/H+ antiporter NhaC [Vibrio cholerae BX 330286], gi\|229355379\|gb\|... gi\|229519027, gi... - gi\|229519027\|ref\|ZP_04408470.1\| Na+/H+ antiporter NhaC [Vibrio cholerae RC9], gi\|229343716\|gb\|EEO086... gi\|229332720, gi... - gi\|229528946\|ref\|ZP_04418336.1\| Na+/H+ antiporter NhaC [Vibrio cholerae 12129(1)], gi\|229332720\|gb\|E... gi\|254844829, gi... - gi\|75829078\|ref\|ZP_00758396.1\| COG1757: Na+/H+ antiporter [Vibrio cholerae MO10], gi\|254849124\|ref\|Z... gi\|229607419, gi... - gi\|229607419\|ref\|YP_002878067.1\| Na+/H+ antiporter NhaC [Vibrio cholerae MJ-1236], gi\|229370074\|gb\|A... gi\|225354370, gi... - gi\|75818486\|ref\|ZP_00748642.1\| COG1757: Na+/H+ antiporter [Vibrio cholerae V51], gi\|254226970\|ref\|ZP... gi\|75814195, gi\|... - gi\|75814195\|ref\|ZP_00744820.1\| COG1757: Na+/H+ antiporter [Vibrio cholerae V52], gi\|121730174\|ref\|ZP... gi\|254286842, gi... - gi\|254286842\|ref\|ZP_04961795.1\| Na+/H+ antiporter [Vibrio cholerae AM-19226], gi\|197751708\|ref\|YP_00... gi\|149738892, gi... - gi\|153827207\|ref\|ZP_01979874.1\| Na+/H+ antiporter [Vibrio cholerae MZO-2], gi\|149738892\|gb\|EDM53220.... gi\|11279977 - pir\|\|G82125 Na+/H+ antiporter VC2037 [imported] - Vibrio cholerae (strain N16961 serogroup O1) gi\|9656583, gi\|1... - gi\|9656583\|gb\|AAF95185.1\| Na+/H+ antiporter [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|15642... gi\|121546842, gi... - gi\|121591306\|ref\|ZP_01678599.1\| Na+/H+ antiporter [Vibrio cholerae 2740-80], gi\|121546842\|gb\|EAX5700... gi\|153224298, gi... - gi\|153224298\|ref\|ZP_01954364.1\| Na+/H+ antiporter [Vibrio cholerae MAK 757], gi\|124117707\|gb\|EAY3645... gi\|153819637, gi... - gi\|153819637\|ref\|ZP_01972304.1\| Na+/H+ antiporter [Vibrio cholerae NCTC 8457], gi\|126509820\|gb\|EAZ72... gi\|229511891, gi... - gi\|229511891\|ref\|ZP_04401370.1\| Na+/H+ antiporter NhaC [Vibrio cholerae B33], gi\|229351856\|gb\|EEO167... gi\|227010052, gi... - gi\|227082164\|ref\|YP_002810715.1\| Na+/H+ antiporter [Vibrio cholerae M66-2], gi\|227010052\|gb\|ACP06264...	2.0E-49	[2..472]	[6..475]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKEIPFGVA MIPIIITVAV MMVTIVVLKQ SPHVPLIIGT TVASIVAWRY GYKWNDIEEA  60
   61 MYKGIHLALP AIVIIILVGL TIGAWIGGGI VATMIYYGLN LLTPSLFLVS ITIICSIVAL 120
  121 AIGSSWSTMG TIGVAGMGIG LSMGIPAPMV AGAIISGSYF GDKMSPLSDT TNLAAGLTNT 180
  181 DLFTHIRHML FTTIPGLIIT LIVYAFLGRS FGANNI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [217-305]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAKSIEQTLQ VLQQNFVISP FLLIIPVVVM VLVAKKVPAI PAILVGIILG FLSQVFIQGG  60
   61 SVSASVGALQ AGFVIDTGNK LVDELFNRG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [306-473]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLDSMMNTVS MTIVAMTFGG VLEHTGILRS IVNQILKLAK SAKGLIASTI ASCFATNLTC  60
   61 SEQYISIVVP SRMYANAYTE KGLHSKNLSR ALEDGGTLTS VFVPWNTCGV FILATLGVGA 120
  121 FEYAPYAILN FIVPIISIIY GITGLTITKL SDIEKAELLK KQNAQLEA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits