YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260456, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260456, gi|....

Description	E-value	Query Range	Subject Range
gi\|110595055, gi... - gi\|110595055\|ref\|ZP_01383393.1\| undecaprenol kinase, putative [Acidovorax sp. JS42], gi\|110335605\|gb...	2.0E-85	[4..262]	[288..546]
UPPP_PSEAB - Undecaprenyl-diphosphatase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=uppP PE=3 SV=1	3.0E-81	[2..263]	[1..264]
UPPP_PSEF5 - Undecaprenyl-diphosphatase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=uppP PE=3 SV=1	9.0E-81	[2..263]	[1..264]
UPPP_PSEAE - Undecaprenyl-diphosphatase OS=Pseudomonas aeruginosa GN=uppP PE=3 SV=1 UPPP_PSEAE - Undecaprenyl-diphosphatase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG ... gi\|107101388 - gi\|107101388\|ref\|ZP_01365306.1\| hypothetical protein PaerPA_01002425 [Pseudomonas aeruginosa PACS2] gi\|84321417, gi\|... - gi\|84321417\|ref\|ZP_00969775.1\| COG1968: Uncharacterized bacitracin resistance protein [Pseudomonas a... gi\|126193721, gi... - gi\|84327790\|ref\|ZP_00975806.1\| COG1968: Uncharacterized bacitracin resistance protein [Pseudomonas a...	2.0E-80	[2..263]	[1..264]
UPPP_PSEA7 - Undecaprenyl-diphosphatase OS=Pseudomonas aeruginosa (strain PA7) GN=uppP PE=3 SV=1	3.0E-80	[2..263]	[1..264]
UPPP1_BURXL - Undecaprenyl-diphosphatase 1 OS=Burkholderia xenovorans (strain LB400) GN=uppP1 PE=3 SV=1	5.0E-79	[2..261]	[1..267]
UPPP_NITEC - Undecaprenyl-diphosphatase OS=Nitrosomonas eutropha (strain C91) GN=uppP PE=3 SV=1	2.0E-78	[4..262]	[6..262]
gi\|113527602, gi... - gi\|113868826\|ref\|YP_727315.1\| undecaprenyl pyrophosphate phosphatase [Ralstonia eutropha H16], gi\|11...	2.0E-78	[5..264]	[20..298]
UPPP_PSE14 - Undecaprenyl-diphosphatase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=upp...	2.0E-78	[1..263]	[1..265]
UPPP_PSEP1 - Undecaprenyl-diphosphatase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=uppP PE=3 SV=1	5.0E-78	[5..263]	[7..264]

Back

Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIITAFIL GIVEGLAEFL PISSTGHLIL VGHLLGFEGE RAKTFEIVIQ LGAILAIAIL  60
   61 YHKRLVSLCN LKPL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [75-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRKEKKFNAF HVFLGVFPAV VAGLLLHDVI KTYLFQPYTV VIGLVAGAIL MIFAEVKKQE  60
   61 ATSYSLDDLT YRQALTIGLF QCLAVYPGFS RAGSTISGGL LAKVNYKTAS EFSFLIALPV 120
  121 MVGATGLDLL KSWTYLSVDD IPMFAVGFIT SFIVAMLAVV TFLKLLEKIG LKPFAYYRIL 180
  181 LAILFTVFVL L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits