YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30253710, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	306 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30253710, gi|....

Description	E-value	Query Range	Subject Range
gi\|78364182, gi\|... - gi\|78485896\|ref\|YP_391821.1\| LysR family transcriptional regulator [Thiomicrospira crunogena XCL-2],...	1.0E-40	[2..306]	[12..318]
gi\|56419426, gi\|... - gi\|56419426\|ref\|YP_146744.1\| LysR family transcriptional regulator [Geobacillus kaustophilus HTA426]... gi\|239807412, gi... - gi\|239827119\|ref\|YP_002949743.1\| transcriptional regulator, LysR family [Geobacillus sp. WCH70], gi\|...	6.0E-40	[2..282]	[11..292]
gi\|75910663, gi\|... - gi\|75910663\|ref\|YP_324959.1\| LysR family transcriptional regulator [Anabaena variabilis ATCC 29413],...	2.0E-39	[3..302]	[16..315]
gi\|82409885, gi\|... - gi\|82701820\|ref\|YP_411386.1\| LysR family transcriptional regulator [Nitrosospira multiformis ATCC 25...	3.0E-39	[2..282]	[15..295]
gi\|47570132, gi\|... - gi\|47570132\|ref\|ZP_00240789.1\| transcription regulator LysR family VC1617, putative [Bacillus cereus...	3.0E-39	[2..280]	[15..293]
gi\|88947237, gi\|... - gi\|88947237\|ref\|ZP_01150244.1\| transcriptional regulator (LysR family) [Desulfotomaculum reducens MI...	4.0E-39	[2..280]	[14..296]
gi\|53736200, gi\|... - gi\|67921289\|ref\|ZP_00514808.1\| regulatory protein, LysR:LysR, substrate-binding [Crocosphaera watson...	4.0E-39	[2..284]	[15..297]
gi\|49329257, gi\|... - gi\|49477701\|ref\|YP_036558.1\| LysR family transcriptional regulator [Bacillus thuringiensis serovar k...	4.0E-39	[2..279]	[15..292]
gi\|22294930, gi\|... - gi\|22298749\|ref\|NP_681996.1\| LysR family transcriptional regulator [Thermosynechococcus elongatus BP...	5.0E-39	[2..283]	[17..305]

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Predicted Domain #1

Region A:
Residues: [1-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHHSYTTEE VAKRLKVSKL TVYDLIKKGE LPSYRVGRQM RIDAADLEQY IKQMKTGKVQ  60
   61 VTPVKNDSNS ISNTCIISGQ ELTLDMLAKR IENRLPSSNI LRAYQGSLTS LVKMYQGEGS 120
  121 IVSLHLFDGE TGTYNVPYVK RILVGQPCTM INLLSRNVGF YVQKGNPKNI KTWADLSQSS 180
  181 IRFVNREKGS GIRVLVDEQL RIQNLNKERI SGYEWEESNH LGVATQVANE KADVGVGSEK 240
  241 FSQIVNVDFI PIMKEQYDLV ILKNKENEEL IEVVKDILQS EEFHNELKAI GGYDMTKTGQ 300
  301 IIYEIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.0
Match:	2h99A
Description:	No description for 2h99A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits