YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30253706, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30253706, gi|....

Description	E-value	Query Range	Subject Range
gi\|58580483, gi\|... - gi\|58580483\|ref\|YP_199499.1\| putative transporter [Xanthomonas oryzae pv. oryzae KACC10331], gi\|5842...	9.0E-50	[24..213]	[90..279]
gi\|54308623, gi\|... - gi\|54308623\|ref\|YP_129643.1\| putative nicotinamide mononucleotide transporter [Photobacterium profun...	2.0E-47	[7..211]	[7..236]
gi\|15778837 - gi\|15778837\|gb\|AAL07520.1\| putative transporter [Xanthomonas oryzae pv. oryzae]	5.0E-47	[24..213]	[51..240]
gi\|254225893, gi... - gi\|75820342\|ref\|ZP_00750392.1\| COG3201: Nicotinamide mononucleotide transporter [Vibrio cholerae V51... gi\|254223022, gi... - gi\|75822880\|ref\|ZP_00752434.1\| COG3201: Nicotinamide mononucleotide transporter [Vibrio cholerae RC3... tr\|D7HAS8\|D7HAS8... - PnuC protein OS=Vibrio cholerae RC385 GN=VCRC385_02447 PE=4 SV=1	1.0E-46	[7..213]	[7..237]
gi\|49082556 - gi\|49082556\|gb\|AAT50678.1\| PA1958 [synthetic construct]	1.0E-46	[24..213]	[1..190]
gi\|126193720, gi... - gi\|84327789\|ref\|ZP_00975805.1\| COG3201: Nicotinamide mononucleotide transporter [Pseudomonas aerugin... gi\|115585130, gi... - gi\|53727993\|ref\|ZP_00139628.2\| COG3201: Nicotinamide mononucleotide transporter [Pseudomonas aerugin... gi\|9947956, gi\|1... - gi\|9947956\|gb\|AAG05346.1\|AE004622_8 probable transporter [Pseudomonas aeruginosa PAO1], gi\|15597154\|... gi\|11352291 - pir\|\|E83401 probable transporter PA1958 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|107101387 - gi\|107101387\|ref\|ZP_01365305.1\| hypothetical protein PaerPA_01002424 [Pseudomonas aeruginosa PACS2] gi\|84321416, gi\|... - gi\|84321416\|ref\|ZP_00969774.1\| COG3201: Nicotinamide mononucleotide transporter [Pseudomonas aerugin...	2.0E-46	[24..213]	[1..190]
gi\|153212857, gi... - gi\|153212857\|ref\|ZP_01948474.1\| pnuC protein [Vibrio cholerae 1587], gi\|124116235\|gb\|EAY35055.1\| pnu... gi\|227014761, gi... - gi\|75824933\|ref\|ZP_00754369.1\| COG3201: Nicotinamide mononucleotide transporter [Vibrio cholerae O39...	3.0E-46	[7..213]	[7..237]
gi\|27359312, gi\|... - gi\|27367739\|ref\|NP_763266.1\| nicotinamide mononucleotide transporter [Vibrio vulnificus CMCP6], gi\|2...	5.0E-46	[4..210]	[4..234]
gi\|37200409, gi\|... - gi\|37675870\|ref\|NP_936266.1\| nicotinamide mononucleotide transporter [Vibrio vulnificus YJ016], gi\|3...	6.0E-46	[4..210]	[4..234]
gi\|77956876 - gi\|77956876\|ref\|ZP_00820951.1\| COG3201: Nicotinamide mononucleotide transporter [Yersinia bercovieri...	8.0E-46	[6..209]	[3..232]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRSPLFLLI TSIICVLVGL YIQSSYIEIF ASVMGIINVW LLAREKVSNF LFGMITVAVF  60
   61 LYIFITQGLY AMAVLAAFQF IFNVYGWYHW IARSGEEEVK ATVRLDLKGW IFYIIFILVA 120
  121 WIGWGYYQVH YLESTSPYLD ALNAVLGLVA QFMLSRKILE NWHLWILYNV VSISIYISTG 180
  181 LYVMLILAVI NLFICVAGLL EWKNNYKGQK HTNNYI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	18.920819
Match:	PF04973.3
Description:	No description for PF04973.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits