YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260374, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260374, gi|....

Description	E-value	Query Range	Subject Range
gi\|56908581, gi\|... - gi\|56962344\|ref\|YP_174069.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus clausii KSM-...	0.0	[1..254]	[37..297]
gi\|89100170, gi\|... - gi\|89100170\|ref\|ZP_01173038.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus sp. NRRL B...	1.0E-99	[1..253]	[9..268]
gi\|78044045, gi\|... - gi\|78044045\|ref\|YP_359973.1\| oligopeptide/dipeptide ABC transporter, ATP-binding protein [Carboxydot...	2.0E-99	[1..253]	[1..259]
gi\|39575859, gi\|... - gi\|42523652\|ref\|NP_969032.1\| oligopeptide ABC transporter, ATP-binding protein [Bdellovibrio bacteri...	4.0E-99	[1..255]	[3..264]
gi\|52079645, gi\|... - gi\|52785008\|ref\|YP_090837.1\| hypothetical protein BLi01236 [Bacillus licheniformis ATCC 14580], gi\|5...	1.0E-98	[1..253]	[1..255]
gi\|25297027 - pir\|\|E84105 oligopeptide ABC transporter (ATP-binding protein) BH3645 [imported] - Bacillus halodura... gi\|15616207, gi\|... - gi\|15616207\|ref\|NP_244512.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus halodurans C...	1.0E-98	[1..253]	[1..260]
gi\|20515603, gi\|... - gi\|20807110\|ref\|NP_622281.1\| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase compone... gi\|20807110 - gi\|20807110\|ref\|NP_622281.1\| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase compone...	1.0E-98	[2..254]	[4..256]
gi\|23099907, gi\|... - gi\|23099907\|ref\|NP_693373.1\| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyen...	5.0E-98	[2..253]	[5..263]
gi\|50843594, gi\|... - gi\|50843594\|ref\|YP_056821.1\| putative peptide ABC transporter, ATP-binding protein [Propionibacteriu...	1.0E-97	[2..253]	[10..269]

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Predicted Domain #1

Region A:
Residues: [1-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTDLITVKQ VTKTYGSKNK EIAALKDISL AIPKGTTLGI IGESGSGKTT LGKLIAGIES  60
   61 PTSGEIDYNG QVVHKLKAAH KRDFLQKVQF IFQDSTAALN PRWKVRDSVT EGYISFGLGD 120
  121 KGLKDKVAGD ALERVGLDRR YINRYPHEFS GGQRQRIAIA RALLCEPEVL ILDEPISALD 180
  181 VSLQIQIVHL LQKIQREQGY TYLFIAHDLP MVHYLCEKVA VLYKGELVEF GNTDEVFRNP 240
  241 QHSYTKTLLA STPKISG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.0
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits