YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260363, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	302 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260363, gi|....

Description	E-value	Query Range	Subject Range
gi\|218159996, gi... - gi\|218232039\|ref\|YP_002365015.1\| oxidoreductase, zinc-binding dehydrogenase family [Bacillus cereus ... gi\|30018436, gi\|... - gi\|30018436\|ref\|NP_830067.1\| quinone oxidoreductase [Bacillus cereus ATCC 14579], gi\|29893976\|gb\|AAP...	1.0E-77	[1..302]	[1..302]
gi\|228860674, gi... - gi\|228898921\|ref\|ZP_04063200.1\| Alcohol dehydrogenase, zinc containing [Bacillus thuringiensis IBL 4... gi\|75758452, gi\|... - gi\|75758452\|ref\|ZP_00738574.1\| Quinone oxidoreductase [Bacillus thuringiensis serovar israelensis AT...	9.0E-77	[1..302]	[21..322]
gi\|89156299, gi\|... - gi\|89205709\|ref\|ZP_01184276.1\| Zinc-containing alcohol dehydrogenase superfamily [Bacillus weihenste...	3.0E-76	[1..302]	[1..302]
gi\|49330753, gi\|... - gi\|49479197\|ref\|YP_034520.1\| alcohol dehydrogenase, zinc containing [Bacillus thuringiensis serovar ...	5.0E-75	[1..302]	[1..302]
gi\|52145046, gi\|... - gi\|52145046\|ref\|YP_081784.1\| alcohol dehydrogenase, zinc containing [Bacillus cereus E33L], gi\|51978...	1.0E-74	[1..302]	[1..302]
gi\|47570452, gi\|... - gi\|47570452\|ref\|ZP_00241086.1\| quinone oxidoreductase [Bacillus cereus G9241], gi\|47552872\|gb\|EAL112...	1.0E-73	[1..302]	[1..302]
gi\|42735194, gi\|... - gi\|42779279\|ref\|NP_976526.1\| alcohol dehydrogenase, zinc-containing [Bacillus cereus ATCC 10987], gi...	3.0E-73	[1..302]	[1..302]
gi\|75812768, gi\|... - gi\|75812768\|ref\|YP_320385.1\| zinc-containing alcohol dehydrogenase superfamily protein [Anabaena var...	4.0E-73	[1..300]	[321..635]
gi\|86134306, gi\|... - gi\|86134306\|ref\|ZP_01052888.1\| zinc-binding dehydrogenase [Polaribacter sp. MED152], gi\|85821169\|gb\|...	4.0E-73	[1..301]	[12..335]

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Predicted Domain #1

Region A:
Residues: [1-302]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAIICTQYG PPNVLQLQNI EKPIPKKNEV LVKIHATSVS TGDCRIRGFN SPLLFWIPMR  60
   61 LILGLRKPRN PILGVELAGE IEDIGTDVTQ FKKGDQIFAL TELNLGGYAE YTCVHESGLI 120
  121 TLKPTNVTYE EAAVIPFGGT SALHFLRKSR IKKGQQVLIY GASGSVGTAA IQLAKYFGAT 180
  181 VTAVCSNSNF ELVQSLGADK VIDYTKEDFT KRRERYDIIF DAVGKHKKSL CKQVLAPNGK 240
  241 YVSVNGMMAK VSKEDMILLK KLTETEHLKP VIDRTYRLEE IAEAHMYVEI GHKKGNVSIT 300
  301 LK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.39794
Match:	1rjwA
Description:	CRYSTAL STRUCTURE OF NAD(+)-DEPENDENT ALCOHOL DEHYDROGENASE FROM BACILLUS STEAROTHERMOPHILUS STRAIN LLD-R
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	2.74364353274408	bayes_pls_golite062009
catalytic activity	1.79741889688267	bayes_pls_golite062009
alcohol dehydrogenase (NAD) activity	1.68027744358887	bayes_pls_golite062009
chaperone binding	1.14101116877859	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	1.03956654822048	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	0.93258555725042	bayes_pls_golite062009
alcohol dehydrogenase activity, zinc-dependent	0.839863523675468	bayes_pls_golite062009
protein binding	0.252261955386392	bayes_pls_golite062009
binding	0.0816350244433392	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: