YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260228, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	660 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260228, gi|....

Description	E-value	Query Range	Subject Range
gi\|89149759, gi\|... - gi\|89202242\|ref\|ZP_01180970.1\| Methionyl-tRNA synthetase, class Ia:Methionyl-tRNA synthetase, beta s...	0.0	[1..660]	[1..659]
gi\|42735032, gi\|... - gi\|42779117\|ref\|NP_976364.1\| methionyl-tRNA synthetase [Bacillus cereus ATCC 10987], gi\|42735032\|gb\|...	0.0	[1..660]	[1..660]
gi\|228657873, gi... - gi\|229125556\|ref\|ZP_04254589.1\| Methionyl-tRNA synthetase [Bacillus cereus BDRD-Cer4], gi\|228657873\|... SYM1_BACCR - Methionine--tRNA ligase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / N...	0.0	[1..660]	[1..660]
gi\|228925292, gi... - gi\|228925292\|ref\|ZP_04088389.1\| Methionyl-tRNA synthetase [Bacillus thuringiensis serovar pondicheri... gi\|229119701, gi... - gi\|229119701\|ref\|ZP_04248963.1\| Methionyl-tRNA synthetase [Bacillus cereus 95/8201], gi\|228663726\|gb... gi\|228815802, gi... - gi\|228943845\|ref\|ZP_04106231.1\| Methionyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey ... gi\|228931541, gi... - gi\|228931541\|ref\|ZP_04094448.1\| Methionyl-tRNA synthetase [Bacillus thuringiensis serovar andalousie... gi\|49477589, gi\|... - gi\|49477589\|ref\|YP_034392.1\| methionyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian str... gi\|218901239, gi... - gi\|218901239\|ref\|YP_002449073.1\| methionyl-tRNA synthetase [Bacillus cereus AH820], gi\|218535747\|gb\|... gi\|196036355, gi... - gi\|196036355\|ref\|ZP_03103752.1\| methionyl-tRNA synthetase [Bacillus cereus W], gi\|195990985\|gb\|EDX54...	0.0	[1..660]	[1..660]
gi\|75759600, gi\|... - gi\|75759600\|ref\|ZP_00739686.1\| Methionyl-tRNA synthetase / Protein secretion chaperonin CsaA [Bacil...	0.0	[1..660]	[10..669]
gi\|89207209, gi\|... - gi\|89207209\|ref\|ZP_01185755.1\| Methionyl-tRNA synthetase, class Ia:Methionyl-tRNA synthetase, beta s... gi\|228751692, gi... - gi\|229009548\|ref\|ZP_04166775.1\| Methionyl-tRNA synthetase [Bacillus mycoides DSM 2048], gi\|228751692... gi\|229131046, gi... - gi\|229131046\|ref\|ZP_04259959.1\| Methionyl-tRNA synthetase [Bacillus cereus BDRD-ST196], gi\|228652383... gi\|228721426, gi... - gi\|229053885\|ref\|ZP_04195320.1\| Methionyl-tRNA synthetase [Bacillus cereus AH603], gi\|228721426\|gb\|E...	0.0	[1..660]	[1..660]
gi\|51978648, gi\|... - gi\|52145179\|ref\|YP_081651.1\| methionyl-tRNA synthetase [Bacillus cereus E33L], gi\|51978648\|gb\|AAU201...	0.0	[1..660]	[1..660]
SYM_BACHD - Methionyl-tRNA synthetase OS=Bacillus halodurans GN=metG PE=3 SV=1 SYM_BACHD - Methionine--tRNA ligase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 91...	0.0	[1..660]	[1..660]
gi\|52078533, gi\|... - gi\|52783895\|ref\|YP_089724.1\| methionyl-tRNA synthetase [Bacillus licheniformis ATCC 14580], gi\|52346...	0.0	[1..660]	[1..662]
gi\|56908077, gi\|... - gi\|56961843\|ref\|YP_173565.1\| methionyl-tRNA synthetase [Bacillus clausii KSM-K16], gi\|56908077\|dbj\|B...	0.0	[4..660]	[2..655]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEENKSFYI TTPIYYPSGK LHIGHAYTTV AGDAMARYKC MQGYNVHYLT GTDEHGQKIQ  60
   61 KKAEELNVTP QAYVDNIVAG IKELWEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.0
Match:	2csxA
Description:	Crystal structure of Aquifex aeolicus methionyl-tRNA synthetase complexed with tRNA(Met)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [88-660]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDISYDDFIR TTEDRHKDVV EKIFKQLVDQ GDIYLDEYEG WYSVQDETFY TEHQLVDPIM  60
   61 EGDKVVGGKS PDSGHDVELV REESYFFRMG KYVDRLLKFY EDNPHFIQPE SRKNEMINNF 120
  121 IKPGLEDLAV SRTSFDWGVR VPGNPKHVIY VWVDALSNYI TALGYGTENE EMYKKFWPAD 180
  181 VHLVGKEIVR FHTIYWPIIL MALDLPLPKK VFAHGWILMK DGKMSKSKGN VVDPVILIDR 240
  241 YGLDALRYYL LREVPFGSDG VFTPEGFVER INFDLANDLG NLLNRTVAMI DKYFNGEIPA 300
  301 FKANVTEFDE TLVTFAKDTL KKVEEAMENM EFSVALSSIW QLVSRTNKYI DETQPWVLAK 360
  361 DEDDREKLAS VMAHLAEVLR QTGIMLMPFL TVAPSKMFAQ LGLTDEAHTS WGSLSTIGCI 420
  421 PAGTKVEKGQ PIFPRLEMDV EVAYIKEQMK ASAPKVEEKK EEEPKAEEIT IDDFFKVELR 480
  481 VAEVLSAEPV KKADKLLKIQ LDLGTEKRQV VSGIAKFYSP EDLKGKKVIC VTNLKPVKLR 540
  541 GELSQGMILA GEENGVLSLA SIDQNIPNGT KIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.0
Match:	1wz2A
Description:	The crystal structure of Leucyl-tRNA synthetase and tRNA(leucine) complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits