YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260205, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260205, gi|....

Description	E-value	Query Range	Subject Range
gi\|34398163 - gi\|34398163\|gb\|AAQ67171.1\| CAD [Bombylius major]	1.0E-38	[3..194]	[133..320]
gi\|34398209 - gi\|34398209\|gb\|AAQ67194.1\| CAD [Schistostoma sp. JKM-2003]	3.0E-38	[3..195]	[135..322]
gi\|34398179 - gi\|34398179\|gb\|AAQ67179.1\| CAD [Hilarimorpha sp. NCSU-99072184]	7.0E-38	[3..193]	[133..319]
gi\|34398201 - gi\|34398201\|gb\|AAQ67190.1\| CAD [Phora sp. JS299]	1.0E-37	[3..195]	[133..320]
gi\|34398185 - gi\|34398185\|gb\|AAQ67182.1\| CAD [Leptopeza sp. NCSU-99071981]	2.0E-37	[3..195]	[133..320]
gi\|34398159 - gi\|34398159\|gb\|AAQ67169.1\| CAD [Agapophytus bicolor]	2.0E-37	[3..191]	[133..316]
gi\|108874420, gi... - gi\|157123307\|ref\|XP_001660108.1\| carbamoyl-phosphate synthase large chain [Aedes aegypti], gi\|108874...	2.0E-37	[3..194]	[182..370]
gi\|34398177 - gi\|34398177\|gb\|AAQ67178.1\| CAD [Heterostomus sp. NCSU-99072185]	3.0E-37	[3..190]	[133..315]
gi\|34398189 - gi\|34398189\|gb\|AAQ67184.1\| CAD [Meghyperus sudeticus]	3.0E-37	[3..188]	[133..313]
gi\|34398181 - gi\|34398181\|gb\|AAQ67180.1\| CAD [Hybos sp. NCSU-99071974]	3.0E-37	[3..190]	[133..315]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKIGVLGLQ GAVREHVKSV EASGAEAVVV KRIEQLEEID GLILPGGEST TMRRLIDKYD  60
   61 FMEPLRTFAK SGKPMFGTCA GMILLAKTLI GYDEAHIGAM DITVERNAFG RQKDSFEAAL 120
  121 SIKGVGEDFV GVFIRAPYVV DVADDVEVLS THGDRMVAVK QGPFLAASFH PELTDDHRVT 180
  181 AYFVEMVKEA KMKKVV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.522879
Match:	1q7rA
Description:	X-ray crystallographic analysis of a predicted amidotransferase from B. stearothermophilus at 1.9 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.30391542469987	bayes_pls_golite062009
binding	0.799270855996775	bayes_pls_golite062009
ligase activity	0.606811845310629	bayes_pls_golite062009
anthranilate synthase activity	0.198608229600186	bayes_pls_golite062009
protein binding	0.0152024556625711	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: