YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|46908864, gi\|...
Organism:	Listeria monocytogenes serotype 4b str. F2365
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46908864, gi|....

Description	E-value	Query Range	Subject Range
gi\|242232464, gi... - gi\|242255981\|ref\|ZP_04800879.1\| phosphotransferase system PTS lactose/cellobiose-specific IIA subuni... gi\|114806629, gi... - gi\|167038933\|ref\|YP_001661918.1\| phosphotransferase system PTS, lactose/cellobiose-specific IIA subu...	130.0	[0..1]	[98..1]
gi\|20515322, gi\|... - gi\|20806853\|ref\|NP_622024.1\| phosphotransferase system cellobiose-specific component IIA [Thermoanae... gi\|20806853 - gi\|20806853\|ref\|NP_622024.1\| Phosphotransferase system cellobiose-specific component IIA [Thermoanae...	129.0	[0..1]	[98..1]
gi\|224499559 - gi\|224499559\|ref\|ZP_03667908.1\| PTS system, beta-glucoside-specific, IIA component [Listeria monocyt... gi\|116873152, gi... - gi\|116873152\|ref\|YP_849933.1\| PTS system, beta-glucoside-specific, IIA component [Listeria welshimer... gi\|254900776, gi... - gi\|254900776\|ref\|ZP_05260700.1\| PTS system, beta-glucoside-specific, IIA component [Listeria monocyt... gi\|127632271, gi... - gi\|254832422\|ref\|ZP_05237077.1\| PTS system, beta-glucoside-specific, IIA component [Listeria monocyt... gi\|16803759 - gi\|16803759\|ref\|NP_465244.1\| hypothetical protein lmo1719 [Listeria monocytogenes EGD-e] gi\|254913738, gi... - gi\|254913738\|ref\|ZP_05263750.1\| PTS system, beta-glucoside-specific, IIA component [Listeria monocyt... gi\|153174893, gi... - gi\|254829241\|ref\|ZP_05233928.1\| PTS system, beta-glucoside-specific, IIA component [Listeria monocyt... gi\|47095645, gi\|... - gi\|47095645\|ref\|ZP_00233252.1\| PTS system, beta-glucoside-specific, IIA component [Listeria monocyto... gi\|16800897 - gi\|16800897\|ref\|NP_471165.1\| hypothetical protein lin1830 [Listeria innocua Clip11262] gi\|16414332, gi\|... - pir\|\|AE1661 phosphotransferase system (PTS) lichenan-specific enzyme IIA component homolog lin1830 [... gi\|16411173, gi\|... - pir\|\|AG1289 phosphotransferase system (PTS) lichenan-specific enzyme IIA component homolog lmo1719 [... gi\|224503356 - gi\|224503356\|ref\|ZP_03671663.1\| PTS system, beta-glucoside-specific, IIA component [Listeria monocyt... gi\|254938125 - gi\|254938125\|ref\|ZP_05269822.1\| PTS system, beta-glucoside-specific, IIA component [Listeria monocyt...	128.0	[0..1]	[100..1]
gi\|46907950, gi\|... - gi\|46907950\|ref\|YP_014339.1\| PTS system, beta-glucoside-specific, IIA component [Listeria monocytoge... gi\|217333401, gi... - gi\|217964131\|ref\|YP_002349809.1\| lichenan-specific phosphotransferase enzyme iia component (pts syst... gi\|255520795 - gi\|255520795\|ref\|ZP_05388032.1\| lichenan-specific phosphotransferase enzyme iia component (pts syste... gi\|254878846 - gi\|254878846\|ref\|ZP_05251556.1\| lichenan-specific phosphotransferase enzyme iia component (pts syste... gi\|254853634 - gi\|254853634\|ref\|ZP_05242982.1\| lichenan-specific phosphotransferase enzyme iia component (pts syste... gi\|153167480, gi... - gi\|254872889\|ref\|ZP_05245599.1\| lichenan-specific phosphotransferase enzyme iia component (pts syste... gi\|254826034 - gi\|254826034\|ref\|ZP_05231035.1\| lichenan-specific phosphotransferase enzyme iia component (pts syste...	128.0	[0..1]	[100..1]
gi\|133735122, gi... - gi\|254932836\|ref\|ZP_05266195.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIA compone... gi\|226224322, gi... - gi\|226224322\|ref\|YP_002758429.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIA compon... gi\|47017390, gi\|... - gi\|47094238\|ref\|ZP_00231949.1\| PTS system, beta-glucoside-specific, IIA component [Listeria monocyto...	128.0	[0..1]	[100..1]
gi\|81429146, gi\|... - gi\|81429146\|ref\|YP_396147.1\| putative cellobiose-specific phosphotransferasesystem, enzyme IIA [Lact...	127.0	[0..5]	[99..8]
gi\|167529327, gi... - gi\|167635284\|ref\|ZP_02393599.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|167640461, gi... - gi\|167640461\|ref\|ZP_02398724.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|170687995, gi... - gi\|170687995\|ref\|ZP_02879208.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|170127345, gi... - gi\|170707788\|ref\|ZP_02898239.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|51973821, gi\|... - gi\|52140352\|ref\|YP_086477.1\| PTS system, cellobiose-specific IIA component (phosphotransferase enzym... gi\|177652940, gi... - gi\|177652940\|ref\|ZP_02935267.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|190561157, gi... - gi\|190567741\|ref\|ZP_03020653.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis Ts... gi\|196029671, gi... - gi\|196039511\|ref\|ZP_03106816.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus NVH05... gi\|196023464, gi... - gi\|196045633\|ref\|ZP_03112863.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus 03BB1... gi\|218537844, gi... - gi\|218906389\|ref\|YP_002454223.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus AH82... gi\|222098670, gi... - gi\|222098670\|ref\|YP_002532728.1\| PTS system, cellobiose-specific IIA component (phosphotransferase e... gi\|49188048, gi\|... - gi\|49188048\|ref\|YP_031301.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis str. ... gi\|49481192, gi\|... - gi\|49481192\|ref\|YP_039203.1\| PTS system, cellobiose-specific IIA component (phosphotransferase enzym... gi\|42740301, gi\|... - gi\|42784369\|ref\|NP_981616.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus ATCC 109... gi\|254757097 - gi\|254757097\|ref\|ZP_05209125.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|47530761, gi\|... - gi\|47530761\|ref\|YP_022110.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis str. ... gi\|254744343 - gi\|254744343\|ref\|ZP_05202023.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|21397675, gi\|... - gi\|65317184\|ref\|ZP_00390143.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|254737016, gi... - gi\|254737016\|ref\|ZP_05194721.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|30259915, gi\|... - gi\|30265238\|ref\|NP_847615.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis str. ... gi\|254724362 - gi\|254724362\|ref\|ZP_05186146.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|254686364 - gi\|254686364\|ref\|ZP_05150223.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|229604727, gi... - gi\|229604727\|ref\|YP_002869432.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis s... gi\|229187426, gi... - gi\|229187426\|ref\|ZP_04314569.1\| Lichenan-specific phosphotransferase enzyme IIA component [Bacillus ... gi\|228689075, gi... - gi\|229094308\|ref\|ZP_04225383.1\| Lichenan-specific phosphotransferase enzyme IIA component [Bacillus ... gi\|227817972, gi... - gi\|227817972\|ref\|YP_002817981.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis s... gi\|225785885, gi... - gi\|225867179\|ref\|YP_002752557.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus 03BB...	126.0	[0..3]	[99..4]
gi\|47553315, gi\|... - gi\|47570016\|ref\|ZP_00240678.1\| PTS system, IIA component [Bacillus cereus G9241], gi\|47569710\|ref\|ZP...	126.0	[0..3]	[99..4]
gi\|241885081, gi... - gi\|241902619\|ref\|ZP_04787352.1\| phosphotransferase system PTS lactose/cellobiose-specific IIA subuni... gi\|255337184, gi... - gi\|255337184\|ref\|ZP_05378065.1\| phosphotransferase system PTS lactose/cellobiose-specific IIA subuni... gi\|76795406, gi\|... - gi\|76795406\|ref\|ZP_00777779.1\| Phosphotransferase system PTS, lactose/cellobiose-specific IIA subuni...	125.0	[0..1]	[98..1]
gi\|91228850, gi\|... - gi\|91228850\|ref\|ZP_01262755.1\| PTS system, cellobiose-specific IIA component [Vibrio alginolyticus 1...	125.0	[0..1]	[99..15]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLEQTIMSL IVFGGNAKSD AMLAIDSAKK GDFAQADEQI AQAEQALLEA HHSQTKLIQG  60
   61 EARGEKTEVS LLLVHAQDHL MNAITFKDLA KEIVDLYKNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.154902
Match:	1e2aA
Description:	Enzyme IIa from lactose specific PTS, IIa-lac
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	5.00429001244066	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	4.03872487639957	bayes_pls_golite062009
transporter activity	1.32957030120524	bayes_pls_golite062009
transmembrane transporter activity	1.20211801626802	bayes_pls_golite062009
active transmembrane transporter activity	1.08511657750399	bayes_pls_golite062009
substrate-specific transporter activity	0.93495816074069	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.81702015470704	bayes_pls_golite062009
binding	0.569728786489819	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.34582307123923	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.0202700968382801	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: