YRC Public Data Repository - Protein Structure Prediction

Protein:	RL13_LISMO
Organism:	Listeria monocytogenes
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL13_LISMO.

Description	E-value	Query Range	Subject Range
RL13_SYMTH - 50S ribosomal protein L13 OS=Symbiobacterium thermophilum GN=rplM PE=3 SV=1 RL13_SYMTH - 50S ribosomal protein L13 OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=rplM PE=3 SV=1	221.0	[0..1]	[143..1]
gi\|47018097, gi\|... - gi\|47093537\|ref\|ZP_00231298.1\| ribosomal protein L13 [Listeria monocytogenes str. 4b H7858], gi\|4701... gi\|254931133, gi... - gi\|254931133\|ref\|ZP_05264492.1\| 50S ribosomal protein L13 [Listeria monocytogenes HPB2262], gi\|15320...	219.0	[0..1]	[145..1]
RL13_BACHD - 50S ribosomal protein L13 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ... RL13_BACHD - 50S ribosomal protein L13 OS=Bacillus halodurans GN=rplM PE=3 SV=1	218.0	[0..1]	[145..1]
RL13_LISIN - 50S ribosomal protein L13 OS=Listeria innocua GN=rplM PE=3 SV=1 RL13_LISIN - 50S ribosomal protein L13 OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=rplM PE=3 SV=1	218.0	[0..1]	[145..1]
gi\|221089355, gi... - gi\|221089355\|ref\|ZP_03558875.1\| ribosomal protein L13 [Geobacillus sp. Y412MC61], gi\|220706781\|gb\|EE... RL13_GEOKA - 50S ribosomal protein L13 OS=Geobacillus kaustophilus (strain HTA426) GN=rplM PE=3 SV=1 gi\|229500508, gi... - gi\|229500508\|ref\|ZP_04394169.1\| ribosomal protein L13 [Geobacillus sp. Y412MC52], gi\|229328625\|gb\|EE... RL13_GEOKA - 50S ribosomal protein L13 OS=Geobacillus kaustophilus GN=rplM PE=3 SV=1	218.0	[0..1]	[145..1]
gi\|26249811, gi\|... - gi\|26249811\|ref\|NP_755851.1\| 50S ribosomal protein L13 [Escherichia coli CFT073], gi\|26110239\|gb\|AAN... gi\|254038390, gi... - gi\|254038390\|ref\|ZP_04872448.1\| 50S ribosomal subunit protein L13 [Escherichia sp. 1_1_43], gi\|22684... gi\|24114518, gi\|... - ref\|NP_709028.1\| 50S ribosomal subunit protein L13 [Shigella flexneri 2a str. 301], gb\|AAN44735.1\| ... gi\|91212650, gi\|... - gi\|91212650\|ref\|YP_542636.1\| 50S ribosomal subunit protein L13 [Escherichia coli UTI89], gi\|91074224... gi\|237706023, gi... - gi\|237706023\|ref\|ZP_04536504.1\| 50S ribosomal subunit protein L13 [Escherichia sp. 3_2_53FAA], gi\|22...	217.0	[0..3]	[143..27]
gi\|114773863, gi... - gi\|114773863\|ref\|ZP_01450822.1\| 50S ribosomal subunit protein L13 [alpha proteobacterium HTCC2255], ... gi\|114773863 - gi\|114773863\|ref\|ZP_01450822.1\| 50S ribosomal subunit protein L13 [alpha proteobacterium HTCC2255] gi\|221135443 - gi\|221135443\|ref\|ZP_03561746.1\| 50S ribosomal protein L13 [Glaciecola sp. HTCC2999]	215.0	[0..3]	[143..2]
gi\|165873349, gi... - gi\|165873349\|ref\|ZP_02217950.1\| ribosomal protein L13 [Bacillus anthracis str. A0488], gi\|164710917\|... gi\|170666360, gi... - gi\|170689689\|ref\|ZP_02880867.1\| ribosomal protein L13 [Bacillus anthracis str. A0465], gi\|170666360\|... gi\|190561564, gi... - gi\|190567437\|ref\|ZP_03020351.1\| ribosomal protein L13 [Bacillus anthracis Tsiankovskii-I], gi\|190561... gi\|195991326, gi... - gi\|196035957\|ref\|ZP_03103358.1\| ribosomal protein L13 [Bacillus cereus W], gi\|195991326\|gb\|EDX55293.... gi\|196041108, gi... - gi\|196041108\|ref\|ZP_03108404.1\| ribosomal protein L13 [Bacillus cereus NVH0597-99], gi\|196028043\|gb\|... gi\|196046232, gi... - gi\|196046232\|ref\|ZP_03113459.1\| ribosomal protein L13 [Bacillus cereus 03BB108], gi\|196022977\|gb\|EDX... gi\|206732770, gi... - gi\|206972196\|ref\|ZP_03233143.1\| 50S ribosomal protein L13 [Bacillus cereus AH1134], gi\|206732770\|gb\|... gi\|206743742, gi... - gi\|206978029\|ref\|ZP_03238914.1\| 50S ribosomal protein L13 [Bacillus cereus H3081.97], gi\|206743742\|g... gi\|254756837 - gi\|254756837\|ref\|ZP_05208865.1\| 50S ribosomal protein L13 [Bacillus anthracis str. Australia 94] gi\|254755529 - gi\|254755529\|ref\|ZP_05207563.1\| 50S ribosomal protein L13 [Bacillus anthracis str. Vollum] gi\|254739475 - gi\|254739475\|ref\|ZP_05197173.1\| 50S ribosomal protein L13 [Bacillus anthracis str. Kruger B] gi\|254735283 - gi\|254735283\|ref\|ZP_05192991.1\| 50S ribosomal protein L13 [Bacillus anthracis str. Western North Ame... gi\|254726278 - gi\|254726278\|ref\|ZP_05188060.1\| 50S ribosomal protein L13 [Bacillus anthracis str. A1055] RL13_BACHK - 50S ribosomal protein L13 OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rplM PE=3 SV=... RL13_BACC7 - 50S ribosomal protein L13 OS=Bacillus cereus (strain AH187) GN=rplM PE=3 SV=1 gi\|254686642 - gi\|254686642\|ref\|ZP_05150501.1\| 50S ribosomal protein L13 [Bacillus anthracis str. CNEVA-9066] gi\|49177104, gi\|... - gi\|49183177\|ref\|YP_026429.1\| 50S ribosomal protein L13 [Bacillus anthracis str. Sterne], gi\|49177104... RL13_BACC4 - 50S ribosomal protein L13 OS=Bacillus cereus (strain B4264) GN=rplM PE=3 SV=1 RL13_BACAA - 50S ribosomal protein L13 OS=Bacillus anthracis (strain A0248) GN=rplM PE=3 SV=1 gi\|47500547, gi\|... - gi\|47525399\|ref\|YP_016748.1\| 50S ribosomal protein L13 [Bacillus anthracis str. 'Ames Ancestor'], gi... RL13_BACC0 - 50S ribosomal protein L13 OS=Bacillus cereus (strain AH820) GN=rplM PE=3 SV=1 gi\|229194533, gi... - gi\|229194533\|ref\|ZP_04321336.1\| 50S ribosomal protein L13 [Bacillus cereus m1293], gi\|228588999\|gb\|E... RL13_BACC1 - 50S ribosomal protein L13 OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=rplM PE=3 SV=1 RL13_BACCQ - 50S ribosomal protein L13 OS=Bacillus cereus (strain Q1) GN=rplM PE=3 SV=1 gi\|229188428, gi... - gi\|229188428\|ref\|ZP_04315476.1\| 50S ribosomal protein L13 [Bacillus cereus ATCC 10876], gi\|228595102... gi\|228606786, gi... - gi\|229176743\|ref\|ZP_04304147.1\| 50S ribosomal protein L13 [Bacillus cereus 172560W], gi\|228606786\|gb... gi\|228629602, gi... - gi\|229153921\|ref\|ZP_04282051.1\| 50S ribosomal protein L13 [Bacillus cereus ATCC 4342], gi\|228629602\|... gi\|229148552, gi... - gi\|229148552\|ref\|ZP_04276808.1\| 50S ribosomal protein L13 [Bacillus cereus m1550], gi\|228634968\|gb\|E... gi\|228640570, gi... - gi\|229142949\|ref\|ZP_04271390.1\| 50S ribosomal protein L13 [Bacillus cereus BDRD-ST24], gi\|228640570\|... gi\|228646527, gi... - gi\|229136989\|ref\|ZP_04265616.1\| 50S ribosomal protein L13 [Bacillus cereus BDRD-ST26], gi\|228646527\|... gi\|229119805, gi... - gi\|229119805\|ref\|ZP_04249066.1\| 50S ribosomal protein L13 [Bacillus cereus 95/8201], gi\|228663706\|gb... gi\|229089274, gi... - gi\|229089274\|ref\|ZP_04220555.1\| 50S ribosomal protein L13 [Bacillus cereus Rock3-42], gi\|228694113\|g... gi\|229083463, gi... - gi\|229083463\|ref\|ZP_04215811.1\| 50S ribosomal protein L13 [Bacillus cereus Rock3-44], gi\|228699896\|g... gi\|30253654, gi\|... - gi\|30260333\|ref\|NP_842710.1\| 50S ribosomal protein L13 [Bacillus anthracis str. Ames], gi\|30253654\|g... gi\|228715267, gi... - gi\|229067908\|ref\|ZP_04201225.1\| 50S ribosomal protein L13 [Bacillus cereus F65185], gi\|228715267\|gb\|... RL13_BACCR - 50S ribosomal protein L13 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / N... RL13_BACAH - 50S ribosomal protein L13 OS=Bacillus thuringiensis (strain Al Hakam) GN=rplM PE=3 SV=1 gi\|228776388, gi... - gi\|228983398\|ref\|ZP_04143611.1\| 50S ribosomal protein L13 [Bacillus thuringiensis serovar tochigiens... gi\|21398101 - ref\|NP_654086.1\| Ribosomal_L13, Ribosomal protein L13 [Bacillus anthracis str. A2012] RL13_BACHK - 50S ribosomal protein L13 OS=Bacillus thuringiensis subsp. konkukian GN=rplM PE=3 SV=1 gi\|228834318, gi... - gi\|228925396\|ref\|ZP_04088492.1\| 50S ribosomal protein L13 [Bacillus thuringiensis serovar pondicheri... gi\|47570255, gi\|... - gi\|47570255\|ref\|ZP_00240906.1\| ribosomal protein L13 [Bacillus cereus G9241], gi\|47553079\|gb\|EAL1147... RL13_BACAN - 50S ribosomal protein L13 OS=Bacillus anthracis GN=rplM PE=3 SV=1 gi\|228840618, gi... - gi\|228919093\|ref\|ZP_04082472.1\| 50S ribosomal protein L13 [Bacillus thuringiensis serovar huazhongen... gi\|228846818, gi... - gi\|228912882\|ref\|ZP_04076529.1\| 50S ribosomal protein L13 [Bacillus thuringiensis serovar pulsiensis... RL13_BACAC - 50S ribosomal protein L13 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rplM PE=3 SV=1 RL13_BACC3 - 50S ribosomal protein L13 OS=Bacillus cereus (strain 03BB102) GN=rplM PE=3 SV=1	215.0	[0..1]	[145..1]
RL13_STAA2 - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain JH1) GN=rplM PE=3 SV=1 RL13_STAA9 - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain JH9) GN=rplM PE=3 SV=1 RL13_STAAR - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain MRSA252) GN=rplM PE=3 SV=1 RL13_STAAE - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain Newman) GN=rplM PE=3 SV=1 RL13_STAAS - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain MSSA476) GN=rplM PE=3 SV=1 gi\|25295174 - pir\|\|E90018 50S ribosomal protein L13 [imported] - Staphylococcus aureus (strain N315) RL13_STAAW - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain MW2) GN=rplM PE=3 SV=1 RL13_STAAC - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain COL) GN=rplM PE=3 SV=1 gi\|269203851\|ref... - 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus ED98] RL13_STAAM - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rplM PE=3 SV=1 RL13_STAAN - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain N315) GN=rplM PE=1 SV=1 RL13_STAA1 - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rplM PE=3 SV=1 RL13_STAA8 - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain NCTC 8325) GN=rplM PE=1 SV=1 RL13_STAA3 - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain USA300) GN=rplM PE=3 SV=1 gi\|221140180 - gi\|221140180\|ref\|ZP_03564673.1\| 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus str. ... RL13_STAAB - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rplM PE=3 SV=1 gi\|221138920 - gi\|221138920\|ref\|ZP_03563721.1\| 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus str. ... RL13_STAAT - 50S ribosomal protein L13 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rplM PE=3 SV=1 gi\|87127142\|gb\|A... - 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus USA300], 50S ribosomal protein L13 [S... gi\|227556951, gi... - gi\|227556951\|ref\|ZP_03986998.1\| 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus MN8],... gi\|227899011, gi... - gi\|227899011\|ref\|ZP_04016816.1\| 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus TCH60... gi\|251803128, gi... - gi\|251813355\|ref\|ZP_04827828.1\| 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus TCH70... gi\|253316979 - gi\|253316979\|ref\|ZP_04840192.1\| 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus str. ... gi\|253729884, gi... - gi\|253729884\|ref\|ZP_04864049.1\| 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus USA30... gi\|253734373, gi... - gi\|253734373\|ref\|ZP_04868538.1\| 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus TCH13... gi\|255006998 - gi\|255006998\|ref\|ZP_05145599.2\| 50S ribosomal protein L13 [Staphylococcus aureus subsp. aureus Mu50-...	215.0	[0..1]	[145..1]
gi\|110807093, gi... - gi\|110807093\|ref\|YP_690613.1\| 50S ribosomal subunit protein L13 [Shigella flexneri 5 str. 8401], gi\|...	214.0	[0..3]	[143..20]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTTYMAKPG EVERKWYVID ATGVSLGRLS SEVASILRGK NKPQFTPHID TGDFVIIINA  60
   61 GKIGLTGKKA TDKIYYRHSQ YPGGLKSRTA GEMRTNNPEK LLELSIKGML PKNSLGRQLF 120
  121 KKLHVYGGSE HEHAAQQPEV YELRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.0
Match:	1p85H
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	10.0286073270483	bayes_pls_golite062009
structural molecule activity	9.45133141168812	bayes_pls_golite062009
binding	1.22159759850364	bayes_pls_golite062009
RNA binding	0.840527362301162	bayes_pls_golite062009
nucleic acid binding	0.513360853458228	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: