YRC Public Data Repository - Protein Structure Prediction

Protein:	DER_LISMO
Organism:	Listeria monocytogenes EGD-e
Length:	436 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DER_LISMO.

Description	E-value	Query Range	Subject Range
ENGA_LISIN, DER_... - GTP-binding protein engA OS=Listeria innocua GN=engA PE=3 SV=1, GTPase Der OS=Listeria innocua GN=de... DER_LISIN - GTPase Der OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=der PE=3 SV=1	341.0	[0..1]	[436..1]
DER_LACDA - GTPase Der OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081 / JCM 1002 ... ENGA_LACDE - (Q8KH12) Probable GTP-binding protein engA DER_LACDB - GTPase Der OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=der PE=3 SV=1	337.0	[0..1]	[436..1]
DER_BACSU - GTPase Der OS=Bacillus subtilis (strain 168) GN=der PE=1 SV=1 ENGA_BACSU, DER_... - GTP-binding protein engA OS=Bacillus subtilis GN=engA PE=1 SV=1, GTPase Der OS=Bacillus subtilis GN=... gi\|221319445 - gi\|221319445\|ref\|ZP_03600739.1\| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. JH6... gi\|221323721 - gi\|221323721\|ref\|ZP_03605015.1\| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. SMY... gi\|221314523 - gi\|221314523\|ref\|ZP_03596328.1\| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. NCI...	332.0	[0..1]	[436..1]
DER_CALS4 - GTPase Der OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBR... ENGA_THETN - GTP-binding protein engA OS=Thermoanaerobacter tengcongensis GN=engA PE=3 SV=1	331.0	[0..1]	[435..1]
DER_CARHZ - GTPase Der OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) GN=der PE=...	331.0	[0..1]	[435..1]
ENGA_LACAC - GTP-binding protein engA OS=Lactobacillus acidophilus GN=engA PE=3 SV=1 DER_LACAC - GTPase Der OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=der PE=3 SV=1	331.0	[0..1]	[436..1]
DER_CLOPE, ENGA_... - GTP-binding protein engA OS=Clostridium perfringens GN=engA PE=3 SV=1, GTPase Der OS=Clostridium per... DER_CLOP1 - GTPase Der OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 82... DER_CLOPS - GTPase Der OS=Clostridium perfringens (strain SM101 / Type A) GN=der PE=3 SV=1 gi\|168217042, gi... - gi\|182380862\|gb\|EDT78341.1\| putative GTP-binding protein Era [Clostridium perfringens NCTC 8239], gi... DER_CLOPE - GTPase Der OS=Clostridium perfringens (strain 13 / Type A) GN=der PE=3 SV=1 gi\|169299237, gi... - gi\|169342731\|ref\|ZP_02863772.1\| putative GTP-binding protein Era [Clostridium perfringens C str. JGS... gi\|177908885, gi... - gi\|182625851\|ref\|ZP_02953617.1\| putative GTP-binding protein Era [Clostridium perfringens D str. JGS... gi\|170661368, gi... - gi\|170661368\|gb\|EDT14051.1\| putative GTP-binding protein Era [Clostridium perfringens E str. JGS1987... gi\|170711316, gi... - gi\|170711316\|gb\|EDT23498.1\| putative GTP-binding protein Era [Clostridium perfringens B str. ATCC 36... gi\|170714259, gi... - gi\|170714259\|gb\|EDT26441.1\| putative GTP-binding protein Era [Clostridium perfringens CPE str. F4969...	330.0	[0..1]	[436..1]
DER_OCEIH - GTPase Der OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=der PE... ENGA_OCEIH - GTP-binding protein engA OS=Oceanobacillus iheyensis GN=engA PE=3 SV=1	329.0	[0..1]	[436..1]
DER_ALKOO - GTPase Der OS=Alkaliphilus oremlandii (strain OhILAs) GN=der PE=3 SV=1	329.0	[0..1]	[435..1]
gi\|27262166 - gi\|27262166\|gb\|AAN87364.1\| GTP-binding protein [Heliobacillus mobilis]	328.0	[0..1]	[436..4]

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Predicted Domain #1

Region A:
Residues: [1-436]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKPVVAIVG RPNVGKSTIF NRIVGERVSI VEDVPGVTRD RIYNSAEWLG KEFNIIDTGG  60
   61 IDLSDEPFLE QIRAQAEIAI DEADVIIFIT NGREGVTDAD EQVAKILYRS NKPIVLAINK 120
  121 VDNPEMRDQI YDFYSLGFGE PYPISGSHGL GLGDMLDAVR AHFPKEEEEE YPDDTVKFSL 180
  181 IGRPNVGKSS ILNALLGEDR VIVSDIAGTT RDAIDTTYTF DGQDYVMIDT AGMRKRGKVY 240
  241 ESTEKYSVLR AMRAIERSDV VLVVINAEEG IREQDKRIAG YAHDAGRAII IVVNKWDAIN 300
  301 KDEKTINVWT EDIREQFQFL SYAPIVFVSA KTKQRLNNLF PLINQVSDNH SLRVQSSMLN 360
  361 DVISDAVAMN PSPMDKGKRL KIFYTTQVAV KPPTFVVFVN DPELMHFSYE RFLENRIREA 420
  421 FPFEGTPIRV IARKRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	91.154902
Match:	2hjgA
Description:	No description for 2hjgA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits