YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|46451182, gi\|...
Organism:	Desulfovibrio vulgaris str. Hildenborough
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46451182, gi|....

Description	E-value	Query Range	Subject Range
gi\|196251628, gi... - gi\|196251628\|ref\|ZP_03150296.1\| Cobyrinic acid ac-diamide synthase [Clostridium thermocellum DSM 415... gi\|125974862, gi... - gi\|67874869\|ref\|ZP_00504449.1\| ATPase, ParA type [Clostridium thermocellum ATCC 27405], gi\|67850972\|...	233.0	[0..15]	[269..1]
gi\|146297750, gi... - gi\|82500912\|ref\|ZP_00886301.1\| ATPases involved in chromosome partitioning [Caldicellulosiruptor sac...	232.0	[0..15]	[269..1]
gi\|68194822, gi\|... - gi\|69247497\|ref\|ZP_00604367.1\| Cobyrinic acid a,c-diamide synthase [Enterococcus faecium DO], gi\|681... gi\|48824601 - ref\|ZP_00285954.1\| COG1192: ATPases involved in chromosome partitioning [Enterococcus faecium]	230.0	[0..15]	[269..1]
gi\|227518145, gi... - gi\|227518145\|ref\|ZP_03948194.1\| chromosome partitioning ATPase [Enterococcus faecalis TX0104], gi\|22... gi\|29345208, gi\|... - gi\|29377740\|ref\|NP_816894.1\| ParaA family ATPase [Enterococcus faecalis V583], gi\|29345208\|gb\|AAO829... gi\|238830948, gi... - gi\|238856387\|ref\|ZP_04646656.1\| sporulation initiation inhibitor protein soj [Enterococcus faecalis ... gi\|229304168, gi... - gi\|229550735\|ref\|ZP_04439460.1\| chromosome partitioning ATPase [Enterococcus faecalis ATCC 29200], g... gi\|229307747, gi... - gi\|229547165\|ref\|ZP_04435890.1\| chromosome partitioning ATPase [Enterococcus faecalis TX1332], gi\|22... gi\|227175226, gi... - gi\|227555649\|ref\|ZP_03985696.1\| chromosome partitioning ATPase [Enterococcus faecalis HH22], gi\|2271...	230.0	[0..15]	[267..1]
gi\|221321318 - gi\|221321318\|ref\|ZP_03602612.1\| chromosome partitioning protein; transcriptional regulator [Bacillus... gi\|221325601 - gi\|221325601\|ref\|ZP_03606895.1\| chromosome partitioning protein; transcriptional regulator [Bacillus... SOJ_BACSU - Sporulation initiation inhibitor protein soj OS=Bacillus subtilis GN=soj PE=1 SV=1 gi\|221316405 - gi\|221316405\|ref\|ZP_03598210.1\| chromosome partitioning protein; transcriptional regulator [Bacillus... SOJ_BACSU - Sporulation initiation inhibitor protein Soj OS=Bacillus subtilis (strain 168) GN=soj PE=1 SV=1	228.0	[0..15]	[266..1]
gi\|254479401, gi... - gi\|254479401\|ref\|ZP_05092734.1\| putative CobQ/CobB/MinD/ParA nucleotide binding domain protein [Carb... gi\|20517799, gi\|... - gi\|20809120\|ref\|NP_624291.1\| ATPase involved in chromosome partitioning [Thermoanaerobacter tengcong... gi\|20809120 - gi\|20809120\|ref\|NP_624291.1\| ATPase involved in chromosome partitioning [Thermoanaerobacter tengcong...	227.0	[0..15]	[266..1]
gi\|52788041, gi\|... - gi\|52788041\|ref\|YP_093870.1\| hypothetical protein BLi04369 [Bacillus licheniformis ATCC 14580], gi\|5...	226.0	[0..15]	[266..1]
gi\|90821760, gi\|... - gi\|90962566\|ref\|YP_536482.1\| chromosome partitioning protein parA [Lactobacillus salivarius UCC118],... gi\|227866762, gi... - gi\|227891373\|ref\|ZP_04009178.1\| chromosome partitioning protein, membrane-associated ATPase [Lactoba...	225.0	[0..15]	[265..1]
gi\|106893737, gi... - gi\|158321886\|ref\|YP_001514393.1\| cobyrinic acid ac-diamide synthase [Alkaliphilus oremlandii OhILAs]...	225.0	[0..15]	[269..1]

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Predicted Domain #1

Region A:
Residues: [1-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLEVPHNAT GTVVVARIIA IANQKGGVGK TTSSVNLAAS LAIMEKKVLL VDCDPQANST  60
   61 SGLGFDQEDI ERSLYTSFFQ PEEVVDAILT TSSPFLSLLP ATTDLVAIEL ELVDKMAREY 120
  121 YLADLLKPLD SRYDYILLDC PPSLGLITLN ALCAARELLI PLQCEFFALE GIVKLLQTYE 180
  181 QVKRRLNQNL SLLGVVLTMY DVRNKLSRQV KNEVRKCFPD HLFETVIPRN VRLSEAPSHG 240
  241 KSIIHYDIKS KGAEAYLALA KEVVLRKPQR RDAQAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.221849
Match:	1wcv1
Description:	Structure of the bacterial chromosome segregation protein Soj
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits