YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|46581749, gi\|...
Organism:	Desulfovibrio vulgaris str. Hildenborough
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46581749, gi|....

Description	E-value	Query Range	Subject Range
gi\|241879879, gi... - gi\|241907707\|ref\|ZP_04792283.1\| thiamine pyrophosphate protein domain protein TPP-binding [Desulfovi... gi\|120601097, gi... - gi\|120601097\|ref\|YP_965497.1\| thiamine pyrophosphate binding domain-containing protein [Desulfovibri...	191.0	[0..1]	[245..16]
gi\|68447348, gi\|... - gi\|70726624\|ref\|YP_253538.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus h...	180.0	[0..2]	[230..5]
gi\|19887182, gi\|... - gi\|20094166\|ref\|NP_614013.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Methanopyrus kan...	178.0	[0..9]	[243..16]
gi\|57866795, gi\|... - gi\|57866795\|ref\|YP_188439.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus e... gi\|251805881, gi... - gi\|251810721\|ref\|ZP_04825194.1\| pyruvate ferredoxin dehydrogenase beta subunit [Staphylococcus epide... gi\|27315431, gi\|... - gi\|27467886\|ref\|NP_764523.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus e...	177.0	[0..2]	[230..5]
gi\|29897421, gi\|... - gi\|30021865\|ref\|NP_833496.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Bacillus cereus ... gi\|206732428, gi... - gi\|206972615\|ref\|ZP_03233557.1\| putative pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus ... gi\|218163359, gi... - gi\|218235402\|ref\|YP_002368576.1\| putative pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus... gi\|218898873, gi... - gi\|218898873\|ref\|YP_002447284.1\| putative pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus...	176.0	[0..2]	[235..5]
gi\|163941461, gi... - gi\|89208771\|ref\|ZP_01187259.1\| 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisova...	175.0	[0..2]	[235..5]
gi\|165872417, gi... - gi\|165872417\|ref\|ZP_02217052.1\| putative pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus ... gi\|167635848, gi... - gi\|167635848\|ref\|ZP_02394157.1\| putative pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus ... gi\|167512265, gi... - gi\|167639864\|ref\|ZP_02398133.1\| putative pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus ... gi\|170128315, gi... - gi\|170706897\|ref\|ZP_02897355.1\| putative pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus ... gi\|177652013, gi... - gi\|177652013\|ref\|ZP_02934559.1\| putative pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus ... gi\|190568490, gi... - gi\|190568490\|ref\|ZP_03021397.1\| putative pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus ... gi\|196034284, gi... - gi\|196034284\|ref\|ZP_03101694.1\| putative pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus ... gi\|254759375 - gi\|254759375\|ref\|ZP_05211400.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Bacillus anth... gi\|254751057 - gi\|254751057\|ref\|ZP_05203096.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Bacillus anth... gi\|254739661 - gi\|254739661\|ref\|ZP_05197355.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Bacillus anth... gi\|254735813 - gi\|254735813\|ref\|ZP_05193519.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Bacillus anth... gi\|254722039 - gi\|254722039\|ref\|ZP_05183828.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Bacillus anth... gi\|229604718, gi... - gi\|229604718\|ref\|YP_002868015.1\| putative pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus... gi\|196030738, gi... - gi\|196038330\|ref\|ZP_03105639.1\| putative pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus ... gi\|227002616, gi... - gi\|227813319\|ref\|YP_002813328.1\| putative pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus... gi\|196044462, gi... - gi\|196044462\|ref\|ZP_03111697.1\| putative pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus ... gi\|225865754, gi... - gi\|225865754\|ref\|YP_002751132.1\| putative pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus... gi\|206977912, gi... - gi\|206977912\|ref\|ZP_03238800.1\| putative pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus ... gi\|217064430, gi... - gi\|217961194\|ref\|YP_002339762.1\| putative pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus... gi\|218904901, gi... - gi\|218904901\|ref\|YP_002452735.1\| putative pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus... gi\|221241277, gi... - gi\|222097219\|ref\|YP_002531276.1\| pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus cereus Q... gi\|47568278, gi\|... - gi\|47568278\|ref\|ZP_00238981.1\| pyruvate synthase subunit porB [Bacillus cereus G9241], gi\|47555106\|g... gi\|51975184, gi\|... - gi\|52141715\|ref\|YP_085114.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Bacillus cereus ... gi\|49186623, gi\|... - gi\|49186623\|ref\|YP_029875.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Bacillus anthrac... gi\|49481608, gi\|... - gi\|49481608\|ref\|YP_037834.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Bacillus thuring... gi\|42738785, gi\|... - gi\|42782858\|ref\|NP_980105.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Bacillus cereus ... gi\|47504348, gi\|... - gi\|47529200\|ref\|YP_020549.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Bacillus anthrac... gi\|65321099, gi\|... - gi\|65321099\|ref\|ZP_00394058.1\| COG1013: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:fer... gi\|30258423, gi\|... - gi\|30263779\|ref\|NP_846156.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Bacillus anthrac... gi\|118478994, gi... - gi\|118478994\|ref\|YP_896145.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Bacillus thurin...	175.0	[0..2]	[235..5]
gi\|82656421, gi\|... - gi\|82750890\|ref\|YP_416631.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus a... gi\|251802196, gi... - gi\|251814201\|ref\|ZP_04828674.1\| pyruvate ferredoxin dehydrogenase beta subunit [Staphylococcus aureu... gi\|253316427 - gi\|253316427\|ref\|ZP_04839640.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcu... gi\|156979611, gi... - gi\|156979611\|ref\|YP_001441870.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococc... gi\|253733472, gi... - gi\|253733472\|ref\|ZP_04867637.1\| pyruvate ferredoxin dehydrogenase beta subunit [Staphylococcus aureu... gi\|255006077 - gi\|255006077\|ref\|ZP_05144678.2\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcu... gi\|25507040 - pir\|\|E89903 hypothetical protein SA1132 [imported] - Staphylococcus aureus (strain N315) gi\|57286046, gi\|... - gi\|57651860\|ref\|YP_186166.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus a... gi\|87160150\|ref\|... - pyruvate ferredoxin oxidoreductase, beta subunit [Staphylococcus aureus subsp. aureus USA300], pyruv... gi\|87160150, gi\|... - gi\|87160150\|ref\|YP_493880.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus a... gi\|161509456, gi... - gi\|161509456\|ref\|YP_001575115.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococc... gi\|221142524 - gi\|221142524\|ref\|ZP_03567017.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcu... gi\|221138125 - gi\|221138125\|ref\|ZP_03562927.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcu... gi\|15924280, gi\|... - gi\|15924280\|ref\|NP_371814.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus a... gi\|13701090, gi\|... - gi\|15926873\|ref\|NP_374406.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus a... gi\|21204341, gi\|... - gi\|21282902\|ref\|NP_645990.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus a... gi\|49486129, gi\|... - gi\|49486129\|ref\|YP_043350.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus a... gi\|150374211, gi... - gi\|151221411\|ref\|YP_001332233.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococc... gi\|90427466, gi\|... - gi\|90583484\|ref\|ZP_01239240.1\| 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisova... gi\|147740849, gi... - gi\|90586594\|ref\|ZP_01242288.1\| 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisova... gi\|269202907\|ref... - 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus aureus subsp. aureus ED98]	175.0	[0..2]	[230..5]
gi\|48845424, gi\|... - gi\|78222522\|ref\|YP_384269.1\| thiamine pyrophosphate enzyme, C-terminal TPP-binding [Geobacter metall...	175.0	[0..11]	[237..17]
gi\|73662784, gi\|... - gi\|73662784\|ref\|YP_301565.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus s...	175.0	[0..2]	[221..5]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPELLVDRAT HYCPGCHHGV AHRLVAEVLT EMGVAEDTIC VSSIGCSVFI YNYLAVDTVE  60
   61 APHGRAPAVA TGVKRARKDK IVFAYQGDGD LASIGLAEIM HAANRGERMT IVFVNNTVYG 120
  121 MTGGQMAPTT LVGQKTTTCP SGRCRDTEGL PMKMAEIIAG LGGVAYSARV SLDSVKHIRA 180
  181 AKKALRKAFD VQQNDLGFGF VEMLSACPTN WRMDAVKANK RIAEEMIPYF PLGVYKDVTE 240
  241 AEGVC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	1jscA
Description:	Acetohydroxyacid synthase catalytic subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.62581591393304	bayes_pls_golite062009
oxidoreductase activity	1.76278237247276	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	1.33446932713773	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: