YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|46450576, gi\|...
Organism:	Desulfovibrio vulgaris str. Hildenborough
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46450576, gi|....

Description	E-value	Query Range	Subject Range
gi\|120601606, gi... - gi\|120601606\|ref\|YP_966006.1\| DoxX family protein [Desulfovibrio vulgaris subsp. vulgaris DP4], gi\|1...	156.0	[0..21]	[186..1]
MAUE_METFL - (Q50414) Methylamine utilization protein mauE MAUE_METFK - Methylamine utilization protein MauE OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 68...	152.0	[0..33]	[180..1]
gi\|78218257, gi\|... - gi\|78355852\|ref\|YP_387301.1\| hypothetical protein Dde_0805 [Desulfovibrio desulfuricans subsp. desul...	141.0	[0..33]	[179..1]
MAUE_METME - Methylamine utilization protein MauE OS=Methylophilus methylotrophus GN=mauE PE=4 SV=1	126.0	[0..33]	[180..1]
gi\|25505260 - pir\|\|F95280 hypothetical protein SMa0280 [imported] - Sinorhizobium meliloti (strain 1021) magaplasm... gi\|14523219, gi\|... - gi\|16262603\|ref\|NP_435396.1\| hypothetical protein SMa0280 [Sinorhizobium meliloti 1021], gi\|14523219...	124.0	[0..40]	[182..123]
gi\|78195467, gi\|... - gi\|78224212\|ref\|YP_385959.1\| methylamine utilization protein MauE, putative [Geobacter metallireduce...	121.0	[0..38]	[172..4]
gi\|90021588, gi\|... - gi\|90021588\|ref\|YP_527415.1\| hypothetical protein Sde_1943 [Saccharophagus degradans 2-40], gi\|89951...	120.0	[0..42]	[174..107]
gi\|39982376, gi\|... - gi\|39995613\|ref\|NP_951564.1\| methylamine utilization protein MauE, putative [Geobacter sulfurreducen...	119.0	[0..37]	[172..3]
gi\|34396741, gi\|... - gi\|34540428\|ref\|NP_904907.1\| hypothetical protein PG0622 [Porphyromonas gingivalis W83], gi\|34396741...	114.0	[0..38]	[182..1]
MAUE_METEX - Methylamine utilization protein mauE OS=Methylobacterium extorquens GN=mauE PE=4 SV=1 gi\|551310\|gb\|AAB... - mauE	109.0	[0..36]	[174..6]

Back

Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHHKNNRFD GCASIVDHRT MSVQTTVISP SRLRDFALAR PVLFTVRLAL AAVYIIAGAT  60
   61 KLYDVRGFAE IVNMYGIVPI DLLPFVALLL PLVEVVAGVA L

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.03
Match:	2f5kA
Description:	No description for 2f5kA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.268337333010953	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [102-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAGRDWGLAL VTALTVLFLA VLGYAIWSGL SIGDCGCFAP GDIPSGHDDG SALKEAFIRD  60
   61 LLLLAGSLHL YLGRHTRAAL HVPHP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: