YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|46450549, gi\|...
Organism:	Desulfovibrio vulgaris str. Hildenborough
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46450549, gi|....

Description	E-value	Query Range	Subject Range
gi\|34495800, gi\|... - gi\|34495800\|ref\|NP_900015.1\| bacteriophage base plate protein [Chromobacterium violaceum ATCC 12472]...	195.0	[0..1]	[207..1]
gi\|30065718, gi\|... - gi\|30065718\|ref\|NP_839863.1\| gpV [Yersinia phage L-413C], gi\|30025912\|gb\|AAP04451.1\| gpV [Bacterioph...	188.0	[0..9]	[208..7]
gi\|188489979, gi... - gi\|75513913\|ref\|ZP_00736266.1\| COG4540: Phage P2 baseplate assembly protein gpV [Escherichia coli 53...	187.0	[0..9]	[208..7]
gi\|75226657 - gi\|75226657\|ref\|ZP_00713650.1\| COG4540: Phage P2 baseplate assembly protein gpV [Escherichia coli B7...	186.0	[0..9]	[208..9]
gi\|168825506, gi... - gi\|32029067\|ref\|ZP_00132156.1\| COG4540: Phage P2 baseplate assembly protein gpV [Haemophilus somnus ...	186.0	[0..7]	[207..5]
SPIKE_BPP2 - Spike protein OS=Enterobacteria phage P2 GN=V PE=1 SV=2	185.0	[0..9]	[208..7]
gi\|46450678, gi\|... - gi\|46581257\|ref\|YP_012065.1\| phage baseplate assembly protein V, putative [Desulfovibrio vulgaris su... gi\|241909423, gi... - gi\|241909423\|ref\|ZP_04793962.1\| phage baseplate assembly protein V [Desulfovibrio vulgaris RCH1], gi...	183.0	[0..6]	[208..7]
gi\|33577031, gi\|... - gi\|33602589\|ref\|NP_890149.1\| hypothetical protein BB3614 [Bordetella bronchiseptica RB50], gi\|335770...	181.0	[0..1]	[207..1]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQQVNRAIA RTLATIRQAF RARLTGLDTT PGVQLAQAGG LAGEQVQASE LFQHFGFTSA  60
   61 PPEGTQCIVL PLGGKTAHSV VVATENGAYR VQALQGGEVC IYNQWG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.93
Match:	2p5zX
Description:	No description for 2p5zX was found.

Predicted Domain #2

Region A:
Residues: [107-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKITLKKEKI VEVDCDHFRV AAKESITMDT KRWQATATEG TAFTSPSVAI GGMGGLKAQA  60
   61 RLDADLQTTG DVTSQGDHVA GGISLRHHRH PGDSGGTTGE SL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits