YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|46450224, gi\|...
Organism:	Desulfovibrio vulgaris str. Hildenborough
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46450224, gi|....

Description	E-value	Query Range	Subject Range
gi\|120601879, gi... - gi\|120601879\|ref\|YP_966279.1\| oxidoreductase FAD/NAD(P)-binding subunit [Desulfovibrio vulgaris subs...	265.0	[0..2]	[283..14]
gi\|78195876, gi\|... - gi\|78224621\|ref\|YP_386368.1\| oxidoreductase FAD/NAD(P)-binding protein [Geobacter metallireducens GS...	252.0	[0..7]	[282..3]
gi\|563906 - gi\|563906\|emb\|CAA53035.1\| hydrogenase (gamma subunit) [Pyrococcus furiosus] gi\|563906 - gi\|563906\|emb\|CAA53035.1\| hydrogenase (gamma subunit) [Pyrococcus furiosus DSM 3638]	252.0	[0..10]	[283..11]
gi\|88918828, gi\|... - gi\|88934370\|ref\|ZP_01140013.1\| heterodisulfide reductase, cytochrome reductase subunit [Geobacter ur...	251.0	[0..11]	[282..6]
gi\|78220974, gi\|... - gi\|78358569\|ref\|YP_390018.1\| hydrogenase, putative [Desulfovibrio desulfuricans subsp. desulfuricans...	250.0	[0..10]	[283..6]
gi\|110547515, gi... - gi\|222056796\|ref\|YP_002539158.1\| oxidoreductase FAD/NAD(P)-binding domain protein [Geobacter sp. FRC...	250.0	[0..11]	[282..7]
gi\|7451847 - pir\|\|H71074 probable cytochrome-c3 hydrogenase gamma chain - Pyrococcus horikoshii gi\|14591102, gi\|... - gi\|3257711\|dbj\|BAA30394.1\| 292aa long hypothetical cytochrome-c3 hydrogenase gamma chain [Pyrococcus...	250.0	[0..10]	[283..12]
gi\|39995196, gi\|... - gi\|39995196\|ref\|NP_951147.1\| heterodisulfide reductase, cytochrome reductase subunit [Geobacter sulf...	249.0	[0..11]	[282..6]
gi\|7451843, gi\|5... - pir\|\|D75133 cytochrome-c3 hydrogenase, chain gamma PAB1785 - Pyrococcus abyssi (strain Orsay), gi\|54... gi\|5458292, gi\|1... - gi\|5458292\|emb\|CAB49781.1\| hydG-1 cytochrome-c3 hydrogenase, gamma chain [Pyrococcus abyssi GE5], gi...	249.0	[0..10]	[283..12]

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Predicted Domain #1

Region A:
Residues: [1-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLGSGFTD NPYLPDVATV LETVQETPAI KTLRVRIDDA ARMDAFRFNP GQVGQLSLFG  60
   61 VGESTFVINS PPTRMDYLQF SIMRAGEVTA ALHGLKPGDK VGVRAPLGNW FPFEDMRGKD 120
  121 IVFVGGGIGM APLRTLLLYM LDNRADYGNI TLLYGARTPG DMAFRDDVQD WLGRSDMNTT 180
  181 LTVDQAPDDW PHRAGLIPHV LLDLAPSNAN SVAVLCGPPI MIKFTVEALK KLHFADEQII 240
  241 TTLERRMKCG IGICGRCNIG TKYVCVDGPV FSYAELKELP NEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	1ndhA
Description:	CRYSTAL STRUCTURE OF NADH-CYTOCHROME B5 REDUCTASE FROM PIG LIVER AT 2.4 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.82418089257266	bayes_pls_golite062009
oxidoreductase activity	1.06930052685144	bayes_pls_golite062009
transferase activity	0.132410979371312	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: