YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|46449900, gi\|...
Organism:	Desulfovibrio vulgaris str. Hildenborough
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46449900, gi|....

Description	E-value	Query Range	Subject Range
gi\|78356616, gi\|... - gi\|78356616\|ref\|YP_388065.1\| MCP methyltransferase, CheR-type [Desulfovibrio desulfuricans subsp. de...	340.0	[0..1]	[291..1]
gi\|120602199, gi... - gi\|120602199\|ref\|YP_966599.1\| protein-glutamate O-methyltransferase [Desulfovibrio vulgaris subsp. v... gi\|241878824, gi... - gi\|241908771\|ref\|ZP_04793333.1\| MCP methyltransferase, CheR-type [Desulfovibrio vulgaris RCH1], gi\|2...	338.0	[0..2]	[292..1]
gi\|39997313, gi\|... - gi\|39997313\|ref\|NP_953264.1\| chemotaxis protein methyltransferase CheR [Geobacter sulfurreducens PCA...	328.0	[0..8]	[291..1]
gi\|94731830, gi\|... - gi\|94987581\|ref\|YP_595514.1\| methylase of chemotaxis methyl-accepting proteins [Lawsonia intracellul...	325.0	[0..2]	[290..1]
gi\|78223508, gi\|... - gi\|78223508\|ref\|YP_385255.1\| MCP methyltransferase, CheR-type [Geobacter metallireducens GS-15], gi\|...	324.0	[0..8]	[291..1]
gi\|88937087, gi\|... - gi\|88937087\|ref\|ZP_01142672.1\| MCP methyltransferase, CheR-type [Geobacter uraniumreducens Rf4], gi\|...	320.0	[0..12]	[291..5]
gi\|221564548, gi... - gi\|222055259\|ref\|YP_002537621.1\| MCP methyltransferase, CheR-type [Geobacter sp. FRC-32], gi\|2215645...	320.0	[0..13]	[291..6]

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Predicted Domain #1

Region A:
Residues: [1-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSLFAKSIT LRTELKISDE EFVQLRDFIY QQCGIYIAEN RKYLVENRLS NRLKDLNLKS  60
   61 FGEYYQYLRY DANKRTELNK LFEVVTTNET SFYRNPPQLQ VFQEKVLGAV IAELRAKGQK 120
  121 RLRIWSAGCS TGEEPYTLGI ILHEVLRSEI ASWDIRITAN DLSEAVLASA RKGMYSDYAL 180
  181 RTTPPDIISR YFIKEGTQYR IDPKVQQLVQ FGQINLSDRT QLKRVERSQI VFCRNVIIYF 240
  241 DDEMKKQVIG SFYDNLLPGG YLLIGHSESL HNISRAFKPE HHTGAIIYRK LA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.30103
Match:	1af7A
Description:	CHER FROM SALMONELLA TYPHIMURIUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity	1.05424873310521	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.854425465362466	bayes_pls_golite062009
O-methyltransferase activity	0.85422125054835	bayes_pls_golite062009
methyltransferase activity	0.84003681899004	bayes_pls_golite062009
protein-glutamate O-methyltransferase activity	0.5118916412645	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.266076794310504	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: