YRC Public Data Repository - Protein Structure Prediction

Protein:	RL21_DESVH
Organism:	Desulfovibrio vulgaris str. Hildenborough
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL21_DESVH.

Description	E-value	Query Range	Subject Range
gi\|5712722 - gi\|5712722\|gb\|AAD47625.1\| unknown [Pseudomonas sp. BG33R]	151.0	[0..2]	[102..103]
gi\|71735895, gi\|... - gi\|71735895\|ref\|YP_273005.1\| ribosomal protein L21 [Pseudomonas syringae pv. phaseolicola 1448A], gi...	146.0	[0..1]	[102..50]
gi\|78220139, gi\|... - gi\|78357734\|ref\|YP_389183.1\| 50S ribosomal protein L21P [Desulfovibrio desulfuricans subsp. desulfur...	145.0	[0..1]	[102..48]
gi\|84691601, gi\|... - gi\|84702355\|ref\|ZP_01016930.1\| LSU ribosomal protein L21P [Parvularcula bermudensis HTCC2503], gi\|84...	141.0	[0..1]	[100..56]
gi\|26987424, gi\|... - gi\|26987424\|ref\|NP_742849.1\| 50S ribosomal protein L21 [Pseudomonas putida KT2440], gi\|24982083\|gb\|A...	141.0	[0..2]	[102..69]
gi\|88701388, gi\|... - gi\|88704337\|ref\|ZP_01102051.1\| 50S ribosomal protein L21 [gamma proteobacterium KT 71], gi\|88701388\|...	136.0	[0..1]	[102..1]
gi\|114328367, gi... - gi\|114328367\|ref\|YP_745524.1\| 50S ribosomal protein L21 [Granulibacter bethesdensis CGDNIH1], gi\|114...	136.0	[0..1]	[102..44]
gi\|90338097, gi\|... - gi\|90418425\|ref\|ZP_01226337.1\| ribosomal protein L21 [Aurantimonas sp. SI85-9A1], gi\|90338097\|gb\|EAS... gi\|90338097, gi\|... - gi\|90418425\|ref\|ZP_01226337.1\| ribosomal protein L21 [Aurantimonas sp. SI85-9A1], gi\|90338097\|gb\|EAS...	136.0	[0..1]	[100..1]
RL21_DECAR - 50S ribosomal protein L21 OS=Dechloromonas aromatica (strain RCB) GN=rplU PE=3 SV=1	136.0	[0..1]	[102..1]
gi\|221086589, gi... - gi\|221086589\|ref\|ZP_03556131.1\| ribosomal protein L21 [Geobacillus sp. Y412MC61], gi\|220709586\|gb\|EE... gi\|229331833, gi... - gi\|229497355\|ref\|ZP_04391056.1\| ribosomal protein L21 [Geobacillus sp. Y412MC52], gi\|229331833\|gb\|EE... RL21_GEOKA - 50S ribosomal protein L21 OS=Geobacillus kaustophilus (strain HTA426) GN=rplU PE=3 SV=1 RL21_GEOKA - 50S ribosomal protein L21 OS=Geobacillus kaustophilus GN=rplU PE=3 SV=1	135.0	[0..1]	[102..1]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYAIIETGGK QFRVEEGSKI FVEKLASEAG SEIVIDKVLM LGGGDVKVGA PYVENAKVTA  60
   61 EVVEHGRGEK VVIFKKWRRN DSRKKQGHRQ DFTALKIKAI TA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.045757
Match:	1vsaP
Description:	No description for 1vsaP was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits