YRC Public Data Repository - Protein Structure Prediction

Protein:	CSRA_DESVH
Organism:	Desulfovibrio vulgaris str. Hildenborough
Length:	78 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSRA_DESVH.

Description	E-value	Query Range	Subject Range
CSRA_DESAG - Carbon storage regulator homolog OS=Desulfovibrio alaskensis (strain G20) GN=csrA PE=3 SV=1	115.0	[0..1]	[78..1]
CSRA_GEOMG - Carbon storage regulator homolog OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)...	103.0	[0..1]	[70..1]
CSRA_GEOUR - Carbon storage regulator homolog OS=Geobacter uraniireducens (strain Rf4) GN=csrA PE=3 SV=1	100.0	[0..1]	[73..1]
gi\|227161929, gi... - gi\|227357819\|ref\|ZP_03842167.1\| carbon storage regulator [Proteus mirabilis ATCC 29906], gi\|22716192... CSRA_PROMI - Carbon storage regulator homolog OS=Proteus mirabilis GN=csrA PE=3 SV=1 CSRA_PROMH - Carbon storage regulator homolog OS=Proteus mirabilis (strain HI4320) GN=csrA PE=3 SV=1 gi\|226328740, gi... - gi\|226328740\|ref\|ZP_03804258.1\| hypothetical protein PROPEN_02640 [Proteus penneri ATCC 35198], gi\|2...	100.0	[0..1]	[60..1]
CSRA_PSYWF - Carbon storage regulator homolog OS=Psychrobacter sp. (strain PRwf-1) GN=csrA PE=3 SV=1	100.0	[0..1]	[62..1]
CSRA_DESHY - Carbon storage regulator homolog OS=Desulfitobacterium hafniense (strain Y51) GN=csrA PE=3 SV=1	100.0	[0..1]	[77..1]
gi\|90331476, gi\|... - gi\|90416723\|ref\|ZP_01224653.1\| carbon storage regulator [marine gamma proteobacterium HTCC2207], gi\|... gi\|90416723\|ref\|... - carbon storage regulator [marine gamma proteobacterium HTCC2207]	100.0	[0..1]	[65..1]
CSRA_DESHD - Carbon storage regulator homolog OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=csrA ...	100.0	[0..1]	[77..1]
CSRA_GEOSL - Carbon storage regulator homolog OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) G... CSRA_GEOSL - Carbon storage regulator homolog OS=Geobacter sulfurreducens GN=csrA PE=3 SV=1	100.0	[0..1]	[70..1]
gi\|88773955, gi\|... - gi\|88794830\|ref\|ZP_01110535.1\| carbon storage regulator [Alteromonas macleodii 'Deep ecotype'], gi\|8...	99.0	[0..1]	[55..31]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLILTRKAGE SLHLGDDIRI TVLGIQGKQV KIGIEVPGDM VVYREEVYRR VIEENRMALD  60
   61 ISNADLLAAT KIWHGRTK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	2btiA
Description:	Structure-function studies of the RmsA CsrA post-transcriptional global regulator protein family reveals a class of RNA-binding structure
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits