YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|46578633, gi\|...
Organism:	Desulfovibrio vulgaris str. Hildenborough
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46578633, gi|....

Description	E-value	Query Range	Subject Range
gi\|46450678, gi\|... - gi\|46581257\|ref\|YP_012065.1\| phage baseplate assembly protein V, putative [Desulfovibrio vulgaris su... gi\|241909423, gi... - gi\|241909423\|ref\|ZP_04793962.1\| phage baseplate assembly protein V [Desulfovibrio vulgaris RCH1], gi...	1.0E-53	[1..212]	[1..212]
gi\|157077835, gi... - gi\|75190000\|ref\|ZP_00703267.1\| COG4384: Mu-like prophage protein gp45 [Escherichia coli E24377A], gi... gi\|57904736 - gi\|57904736\|gb\|AAW58981.1\| gp45 [Cloning vector MuNXKan] BP45_BPMU - Baseplate puncturing device gp45 OS=Enterobacteria phage Mu GN=Mup45 PE=1 SV=1	3.0E-45	[1..208]	[4..195]
gi\|34495800, gi\|... - gi\|34495800\|ref\|NP_900015.1\| bacteriophage base plate protein [Chromobacterium violaceum ATCC 12472]...	9.0E-45	[3..209]	[6..207]
gi\|30065718, gi\|... - gi\|30065718\|ref\|NP_839863.1\| gpV [Yersinia phage L-413C], gi\|30025912\|gb\|AAP04451.1\| gpV [Bacterioph...	5.0E-44	[10..210]	[7..211]
gi\|188489371, gi... - gi\|75513078\|ref\|ZP_00735540.1\| COG4384: Mu-like prophage protein gp45 [Escherichia coli 53638], gi\|1...	6.0E-44	[1..208]	[4..195]
gi\|75208218, gi\|... - gi\|75208218\|ref\|ZP_00708587.1\| COG4384: Mu-like prophage protein gp45 [Escherichia coli B171], gi\|19...	8.0E-44	[6..208]	[1..187]
gi\|191169690, gi... - gi\|75226773\|ref\|ZP_00713714.1\| COG4540: Phage P2 baseplate assembly protein gpV [Escherichia coli B7...	2.0E-43	[10..210]	[7..211]
gi\|168825506, gi... - gi\|32029067\|ref\|ZP_00132156.1\| COG4540: Phage P2 baseplate assembly protein gpV [Haemophilus somnus ...	3.0E-43	[9..209]	[6..207]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRNTFNRML DPFKRKLCGM AARAVVRLVS DGVRMQALQL GLLDGELADG VERFQNYGLT  60
   61 SHPHPGAEAA VIFLGADRGH GVAIAVDDRR YRLVSLQPGE VALYTD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.08
Match:	2p5zX
Description:	No description for 2p5zX was found.

Predicted Domain #2

Region A:
Residues: [107-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGDVIHLMRD RRIKVSTLHL EVEAQEDVTM TTRRFGVTAS EGVTFTTPAF TARGAGGGAA  60
   61 SARFEGALHT TGDLTTDADA KAGAVSLRAH THPETNGAAT LPPIGG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits