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View Structure Prediction Details

Protein: gi|46445975, gi|...
Organism: Candidatus Protochlamydia amoebophila UWE25
Length: 266 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46445975, gi|....

Description E-value Query
Range
Subject
Range
gi|45190603, gi|... - gi|45190603|ref|NP_984857.1| AEL004Wp [Ashbya gossypii ATCC 10895], gi|44983582|gb|AAS52681.1| AEL00...
gi|44983582 - gi|44983582|gb|AAS52681.1| AEL004Wp [Ashbya gossypii ATCC 10895]
305.0 [0..5] [266..174]

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Predicted Domain #1
Region A:
Residues: [1-82]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYMDCLAYC TASSYQIKPL FESLKHQGAT LYRDVVHLPI PGISIGDIFY FSYGATVCWG  60
   61 VTPDQCQQFL DQAKAYEEQP LI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.581 N/A N/A d.199.1 DNA-binding C-terminal domain of the transcription factor MotA
View Download 0.536 N/A N/A d.129.1 TATA-box binding protein-like
View Download 0.519 N/A N/A d.129.1 TATA-box binding protein-like
View Download 0.505 N/A N/A c.15.1 BRCT domain
View Download 0.502 N/A N/A c.30.1 PreATP-grasp domain

Predicted Domain #2
Region A:
Residues: [83-266]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEEMDIDEFT FTFGDVPKII EDEIILPNRD VLNRLAISHG LAQSVKLGTF EHAIRRTFQF  60
   61 TKRIPQDLAK QGKIPLSRKE IRKKMGALFI ERNSINLHLD ILDTPEFFWE YSELEPLYAM 120
  121 TNNYLDIDTR VEVLNQRLDV MHELFEMLGN ELNHQHSSRL EWTIICLIVI EVFLSIWRDV 180
  181 FHFI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle