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View Structure Prediction Details

Protein: gi|2120598
Organism: Thermus aquaticus
Length: 229 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2120598.

Description E-value Query
Range
Subject
Range
gi|116668234, gi... - gi|211938913|pdb|2JL8|C Chain C, Insights Into Translational Termination From The Structure Of Rf2 B...
RL1_THET8 - 50S ribosomal protein L1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rplA PE=1 SV...
299.0 [0..1] [229..1]

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Predicted Domain #1
Region A:
Residues: [1-229]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKHGKRYRA LLEKVDPNKI YTIDEAAHLV KELATAKFDE TVEVHAKLGI DPRRSDQNVR  60
   61 GTVSLPHGLG KQVRVLAIAK GEKIKEAEEA GADYVGGEEI IQKILDGWMD FDAVVATPDV 120
  121 MGAVGSKLGR ILGPRGLLPN PKAGTVGFNI GEIIREIKAG RIEFRNDKTG AIHAPVGKAS 180
  181 FPPEKLADNI RAFIRALEAH KPEGAKGTFL RSVYVTTTMG PSVRINPHS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 81.39794
Match: 1eg0N
Description: 70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.98821526471491 bayes_pls_golite062009
structural molecule activity 9.4110731269774 bayes_pls_golite062009
binding 1.37133122073906 bayes_pls_golite062009
protein binding 0.335149649581279 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle