YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|45601739, gi\|...
Organism:	Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|45601739, gi|....

Description	E-value	Query Range	Subject Range
gi\|24213702, gi\|... - gi\|24213702\|ref\|NP_711183.1\| virulence associated protein B [Leptospira interrogans serovar Lai str....	113.0	[0..1]	[76..1]
gi\|88917197, gi\|... - gi\|88936066\|ref\|ZP_01141685.1\| virulence associated protein B [Geobacter uraniumreducens Rf4], gi\|88...	103.0	[0..1]	[76..1]
gi\|39997568, gi\|... - gi\|39997568\|ref\|NP_953519.1\| virulence associated protein B [Geobacter sulfurreducens PCA], gi\|39984...	103.0	[0..1]	[75..1]
gi\|110599983, gi... - gi\|222055312\|ref\|YP_002537674.1\| SpoVT/AbrB domain protein [Geobacter sp. FRC-32], gi\|221564601\|gb\|A...	103.0	[0..1]	[75..1]
gi\|62129177, gi\|... - gi\|62181544\|ref\|YP_217961.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serov...	100.0	[0..1]	[75..47]
gi\|7428908 - pir\|\|S74973 virulence associated protein vapB - Synechocystis sp. (strain PCC 6803) gi\|16329605, gi\|... - gi\|1652088\|dbj\|BAA17013.1\| virulence associated protein B [Synechocystis sp. PCC 6803], gi\|16329605\|...	99.0	[0..1]	[75..1]
gi\|106890400, gi... - gi\|106890400\|ref\|ZP_01357595.1\| SpoVT/AbrB-like [Roseiflexus sp. RS-1], gi\|106770870\|gb\|EAT27510.1\| ...	96.0	[0..1]	[76..15]
gi\|112823951, gi... - gi\|23467533\|ref\|ZP_00123114.1\| COG4456: Virulence-associated protein and related proteins [Haemophil...	94.0	[0..3]	[75..5]
gi\|16761811 - gi\|16761811\|ref\|NP_457428.1\| hypothetical protein STY3183 [Salmonella enterica subsp. enterica serov... VAPB_SALTY - Antitoxin VapB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=vapB PE=1 SV=1 gi\|29143295, gi\|... - gi\|29143295\|ref\|NP_806637.1\| hypothetical protein t2944 [Salmonella enterica subsp. enterica serovar... gi\|213646040 - gi\|213646040\|ref\|ZP_03376093.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|213609401 - gi\|213609401\|ref\|ZP_03369227.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|213579770 - gi\|213579770\|ref\|ZP_03361596.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|213420651 - gi\|213420651\|ref\|ZP_03353717.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|213852115 - gi\|213852115\|ref\|ZP_03381647.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|213163805 - gi\|213163805\|ref\|ZP_03349515.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|16504113, gi\|... - gi\|25302596\|pir\|\|AD0870 hypothetical protein (assiciated with virulence) STY3183 [imported] - Salmon... gi\|206710101, gi... - gi\|207858298\|ref\|YP_002244949.1\| hypothetical protein (assiciated with virulence) [Salmonella enteri... gi\|198243468, gi... - gi\|198243468\|ref\|YP_002217012.1\| putative virulence-associated protein [Salmonella enterica subsp. e... VAPB_SALTY - Antitoxin VapB OS=Salmonella typhimurium GN=vapB PE=1 SV=1	93.0	[0..1]	[75..1]
gi\|56414981, gi\|... - gi\|56414981\|ref\|YP_152056.1\| hypothetical protein SPA2902 [Salmonella enterica subsp. enterica serov... gi\|224584825, gi... - gi\|224584825\|ref\|YP_002638623.1\| hypothetical protein (associated with virulence) [Salmonella enteri... gi\|197363910, gi... - gi\|197363910\|ref\|YP_002143547.1\| hypothetical protein (assiciated with virulence) [Salmonella enteri...	93.0	[0..1]	[75..1]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTAKLFING RSQAVRLPKE FQFTGDDVLI QKVGEAVILV PKNKAWNVFL EGLNGFSDDF  60
   61 FKEGREQPKS DKREKL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.63
Match:	1ub4C
Description:	MazE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits