YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39577383, gi\|...
Organism:	Bdellovibrio bacteriovorus HD100
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39577383, gi|....

Description	E-value	Query Range	Subject Range
gi\|5712722 - gi\|5712722\|gb\|AAD47625.1\| unknown [Pseudomonas sp. BG33R]	163.0	[0..14]	[118..97]
gi\|71735895, gi\|... - gi\|71735895\|ref\|YP_273005.1\| ribosomal protein L21 [Pseudomonas syringae pv. phaseolicola 1448A], gi...	160.0	[0..14]	[118..46]
gi\|22124586, gi\|... - gi\|22124586\|ref\|NP_668009.1\| 50S ribosomal protein L21 [Yersinia pestis KIM], gi\|21957388\|gb\|AAM8426... gi\|45435282, gi\|... - gi\|45440425\|ref\|NP_991964.1\| 50S ribosomal protein L21 [Yersinia pestis biovar Microtus str. 91001],...	155.0	[0..1]	[118..1]
gi\|26987424, gi\|... - gi\|26987424\|ref\|NP_742849.1\| 50S ribosomal protein L21 [Pseudomonas putida KT2440], gi\|24982083\|gb\|A...	153.0	[0..14]	[118..63]
gi\|78220139, gi\|... - gi\|78357734\|ref\|YP_389183.1\| 50S ribosomal protein L21P [Desulfovibrio desulfuricans subsp. desulfur...	151.0	[0..16]	[118..46]
gi\|84691601, gi\|... - gi\|84702355\|ref\|ZP_01016930.1\| LSU ribosomal protein L21P [Parvularcula bermudensis HTCC2503], gi\|84...	149.0	[0..18]	[159..56]
RL21_IDILO - 50S ribosomal protein L21 OS=Idiomarina loihiensis GN=rplU PE=3 SV=1 RL21_IDILO - 50S ribosomal protein L21 OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=rplU...	148.0	[0..18]	[118..1]
gi\|110646424, gi... - gi\|110833313\|ref\|YP_692172.1\| 50S ribosomal protein L21 [Alcanivorax borkumensis SK2], gi\|110646424\|...	148.0	[0..12]	[119..3]
RL21_SYNJA - 50S ribosomal protein L21 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplU PE=3 SV=1 gi\|86606692 - gi\|86606692\|ref\|YP_475455.1\| ribosomal protein L21 [Cyanobacteria bacterium Yellowstone A-Prime]	146.0	[0..19]	[148..3]
gi\|213971071, gi... - gi\|213971071\|ref\|ZP_03399191.1\| ribosomal protein L21 [Pseudomonas syringae pv. tomato T1], gi\|21392... RL21_PSESM - 50S ribosomal protein L21 OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=rplU PE=3 SV=1 RL21_PSESM - 50S ribosomal protein L21 OS=Pseudomonas syringae pv. tomato GN=rplU PE=3 SV=1	145.0	[0..18]	[118..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSGIYHWLN SGSWRYYMYA IIRTGGKQYK VQAGDVVQVD KLEQALGAEF EINEVLMVGG  60
   61 ESTAVGQPLV KGAKVTVVVT KQAKTRKEIV FKKKRRQGYR KFATHKQEFT ELFVKAISF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.39794
Match:	1vs6R
Description:	No description for 1vs6R was found.

Predicted Domain #2

Region A:
Residues: [120-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGKTAKSDEA ATVVDVKAVR AEKAQARVAA RKERAANKGP AEVVKKAAKK VAKKKVAKKA  60
   61 VKKTVKKATK TGAKKKAAKK TSKKA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.907	a.2.8	Eukaryotic DNA topoisomerase I, dispensable insert domain
View	Download	0.839	a.24.9	alpha-catenin/vinculin
View	Download	0.796	a.2.7	tRNA-binding arm
View	Download	0.741	a.2.7	tRNA-binding arm
View	Download	0.708	a.24.9	alpha-catenin/vinculin
View	Download	0.700	a.2.8	Eukaryotic DNA topoisomerase I, dispensable insert domain
View	Download	0.659	a.7.14	Description not found.
View	Download	0.649	f.15.1	Small-conductance potassium channel
View	Download	0.605	a.25.1	Ferritin-like
View	Download	0.586	a.65.1	Annexin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits