YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39576494, gi\|...
Organism:	Bdellovibrio bacteriovorus HD100
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39576494, gi|....

Description	E-value	Query Range	Subject Range
gi\|25352678, gi\|... - pir\|\|AI2991 conserved hypothetical protein Atu3539 [imported] - Agrobacterium tumefaciens (strain C5... gi\|17937246, gi\|... - gi\|17937246\|ref\|NP_534035.1\| hypothetical protein Atu3539 [Agrobacterium tumefaciens str. C58], gi\|1...	126.0	[0..2]	[137..29]
gi\|13473003, gi\|... - gi\|14023751\|dbj\|BAB50356.1\| mll3477 [Mesorhizobium loti MAFF303099], gi\|13473003\|ref\|NP_104570.1\| hy...	126.0	[0..2]	[137..29]
gi\|192282737, gi... - gi\|192288988\|ref\|YP_001989593.1\| HNH endonuclease [Rhodopseudomonas palustris TIE-1], gi\|192282737\|g... RPA0556 - RPA0556 HNH endonuclease:HNH nuclease 617758:618315 reverse MW:21316	125.0	[0..2]	[137..29]
gi\|220964392, gi... - gi\|221235220\|ref\|YP_002517656.1\| HNH endonuclease family protein [Caulobacter crescentus NA1000], gi... gi\|25352673 - pir\|\|G87521 HNH endonuclease family protein [imported] - Caulobacter crescentus gi\|13423703, gi\|... - gi\|16126439\|ref\|NP_421003.1\| HNH endonuclease family protein [Caulobacter crescentus CB15], gi\|13423...	125.0	[0..2]	[138..31]
gi\|115258695, gi... - gi\|116254047\|ref\|YP_769885.1\| putative endonuclease family protein [Rhizobium leguminosarum bv. vici...	125.0	[0..2]	[137..29]
gi\|83577976, gi\|... - gi\|83595062\|ref\|YP_428814.1\| HNH endonuclease [Rhodospirillum rubrum ATCC 11170], gi\|83577976\|gb\|ABC...	124.0	[0..2]	[138..27]
gi\|114539317, gi... - gi\|114704532\|ref\|ZP_01437440.1\| putative endonuclease protein [Fulvimarina pelagi HTCC2506], gi\|1145...	124.0	[0..2]	[137..31]
gi\|27376478, gi\|... - gi\|27376478\|ref\|NP_768007.1\| hypothetical protein bll1367 [Bradyrhizobium japonicum USDA 110], gi\|27...	124.0	[0..2]	[137..112]
gi\|62196651, gi\|... - gi\|62290519\|ref\|YP_222312.1\| HNH endonuclease family protein [Brucella abortus bv. 1 str. 9-941], gi... gi\|237816026, gi... - gi\|237816026\|ref\|ZP_04595022.1\| HNH endonuclease family protein [Brucella abortus str. 2308 A], gi\|2... gi\|82700435 - gi\|82700435\|ref\|YP_415009.1\| HNH endonuclease:HNH nuclease [Brucella melitensis biovar Abortus 2308] gi\|254689818 - gi\|254689818\|ref\|ZP_05153072.1\| HNH endonuclease [Brucella abortus bv. 6 str. 870] gi\|82616536 - gi\|82616536\|emb\|CAJ11614.1\| HNH endonuclease:HNH nuclease [Brucella melitensis biovar Abortus 2308] gi\|189024743, gi... - gi\|189024743\|ref\|YP_001935511.1\| HNH endonuclease [Brucella abortus S19], gi\|189020315\|gb\|ACD73037.1... gi\|254697966 - gi\|254697966\|ref\|ZP_05159794.1\| HNH endonuclease [Brucella abortus bv. 2 str. 86/8/59] gi\|254730852 - gi\|254730852\|ref\|ZP_05189430.1\| HNH endonuclease [Brucella abortus bv. 4 str. 292]	124.0	[0..2]	[137..34]
gi\|86283469, gi\|... - gi\|86359367\|ref\|YP_471259.1\| putative endonuclease protein [Rhizobium etli CFN 42], gi\|86283469\|gb\|A...	124.0	[0..3]	[137..30]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLISVERALK LSSGGGLRGP VSYVIKRRMD YFFSAAPPEH QKREKAKARE LRQSQWWKQE  60
   61 LGKGLCYHCG KRFKPADLTM DHLIPIARGG KSNKNNCVPS CKDCNSKKGY KTRAEMALEE 120
  121 LKNSSAPVPS EDQNEQDDQE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.045757
Match:	2qgpA
Description:	No description for 2qgpA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits