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View Structure Prediction Details

Protein: gi|39575773, gi|...
Organism: Bdellovibrio bacteriovorus HD100
Length: 218 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39575773, gi|....

Description E-value Query
Range
Subject
Range
gi|115379577, gi... - gi|115379577|ref|ZP_01466665.1| succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B [Stigmatell...
268.0 [0..1] [218..1]

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Predicted Domain #1
Region A:
Residues: [1-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLTREQIAQ RIAQEVEDGY CVNLGIGIPT LVANYIPRDK FVMLQSENGL LGMGPFPKEA  60
   61 DIDADLINAG KQTVTALPGA SFFSSADSFA MIRGGHVDLT VLGAMEVDET GSIANWMVPG 120
  121 KMVKGMGGAM DLVAGARNVI VAMQHTDKEG NSKLRTKCTL PLTGVKCIKK IVSDFGVIEI 180
  181 TPEGFVLKEY APDLTPEKVL AATEGKMKIA PDCKAMTF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.221849
Match: 1m3eA
Description: Succinate:CoA transferase, N-terminal domain; Succinate:CoA transferase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
3-oxoacid CoA-transferase activity 2.22792536321983 bayes_pls_golite062009
catalytic activity 1.68776709414398 bayes_pls_golite062009
CoA-transferase activity 0.50782945985068 bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups 0.18413827683017 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle