YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42409790, gi\|...
Organism:	Wolbachia endosymbiont of Drosophila melanogaster
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42409790, gi|....

Description	E-value	Query Range	Subject Range
gi\|225629957, gi... - gi\|225629957\|ref\|YP_002726748.1\| exopolysaccharide synthesis protein ExoD-related protein [Wolbachia... gi\|58534457, gi\|... - gi\|58699029\|ref\|ZP_00373874.1\| exopolysaccharide synthesis protein ExoD-related protein [Wolbachia e...	240.0	[0..1]	[218..1]
gi\|99036052 - gi\|99036052\|ref\|ZP_01315088.1\| hypothetical protein Wendoof_01000058 [Wolbachia endosymbiont of Dros...	238.0	[0..1]	[218..1]
gi\|58584936, gi\|... - gi\|58584936\|ref\|YP_198509.1\| ABC transporter permease [Wolbachia endosymbiont strain TRS of Brugia m...	229.0	[0..1]	[218..1]
gi\|42520054, gi\|... - gi\|42520054\|ref\|NP_965969.1\| exopolysaccharide synthesis protein ExoD-related protein [Wolbachia end...	229.0	[0..1]	[215..1]
gi\|58696737, gi\|... - gi\|58696737\|ref\|ZP_00372280.1\| exopolysaccharide synthesis protein ExoD-related protein [Wolbachia e...	219.0	[0..1]	[215..1]
gi\|72394074, gi\|... - gi\|73666933\|ref\|YP_302949.1\| exopolysaccharide synthesis, ExoD [Ehrlichia canis str. Jake], gi\|72394...	201.0	[0..6]	[215..1]
gi\|68171833, gi\|... - gi\|68171833\|ref\|ZP_00545168.1\| Exopolysaccharide synthesis, ExoD [Ehrlichia chaffeensis str. Sapulpa... gi\|88657791, gi\|... - gi\|88657791\|ref\|YP_507567.1\| exopolysaccharide synthesis protein [Ehrlichia chaffeensis str. Arkansa...	199.0	[0..6]	[215..1]
gi\|58417621, gi\|... - gi\|58578995\|ref\|YP_197207.1\| hypothetical protein ERWE_CDS_03310 [Ehrlichia ruminantium str. Welgevo... gi\|58416665, gi\|... - gi\|58617053\|ref\|YP_196252.1\| hypothetical protein ERGA_CDS_03260 [Ehrlichia ruminantium str. Gardel]...	196.0	[0..6]	[215..1]

Back

Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKNDKLTKS DKLASDILKE VADTNNNDSD KVTLFDIKTA LHERGFGILI IIFSLPLSVP  60
   61 IPVPPGYTTI LSIPLILFSL QLLFGFDSPW MPHWLERRSF QRSTLAFVVE KTSPALKKIE 120
  121 KFMKPRMSFI FYGPGEKILA FVMLLSALSI ALPLPLTNFI PAIGTTLISL GIMSKDGFLS 180
  181 ILGVLISLCG LLLTLVVVVK GPQLIIGAFS FLKSFVYG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	41.327902
Match:	PF06055.3
Description:	No description for PF06055.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits