YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|41819537, gi\|...
Organism:	Treponema denticola ATCC 35405
Length:	65 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|41819537, gi|....

Description	E-value	Query Range	Subject Range
gi\|7462780 - pir\|\|A72347 hypothetical protein TM0675 - Thermotoga maritima (strain MSB8) gi\|15643439, gi\|... - gi\|4981198\|gb\|AAD35758.1\|AE001740_4 flagellar protein, putative [Thermotoga maritima MSB8], gi\|15643...	100.0	[0..1]	[64..1]
gi\|3323027, gi\|1... - gi\|3323027\|gb\|AAC65691.1\| flagellar protein (flbD) [Treponema pallidum subsp. pallidum str. Nichols]... gi\|7521072 - pir\|\|B71292 probable flagellar protein (flbD) - syphilis spirochete gi\|2196894 - gi\|2196894\|gb\|AAB61252.1\| Orf4 [Treponema pallidum] gi\|189025951, gi... - gi\|189025951\|ref\|YP_001933723.1\| flagellar protein [Treponema pallidum subsp. pallidum SS14], gi\|189...	99.0	[0..1]	[64..1]
gi\|1399284 - gi\|1399284\|gb\|AAB03249.1\| orf4; initiates with GTG	98.0	[0..1]	[65..1]
gi\|24216277, gi\|... - gi\|24216277\|ref\|NP_713758.1\| flagellar protein D [Leptospira interrogans serovar Lai str. 56601], gi... gi\|45599754, gi\|... - gi\|45656519\|ref\|YP_000605.1\| flagellar protein [Leptospira interrogans serovar Copenhageni str. Fioc...	90.0	[0..1]	[61..1]
gi\|67986433, gi\|... - gi\|69287648\|ref\|ZP_00617979.1\| Flagellar [Kineococcus radiotolerans SRS30216], gi\|67986433\|gb\|EAM742...	90.0	[0..2]	[58..65]
gi\|39998117, gi\|... - gi\|39998117\|ref\|NP_954068.1\| flagellar protein FlbD, putative [Geobacter sulfurreducens PCA], gi\|399...	89.0	[0..1]	[58..1]
gi\|116122040, gi... - gi\|116329296\|ref\|YP_799016.1\| endoflagellar protein [Leptospira borgpetersenii serovar Hardjo-bovis ... gi\|116330097, gi... - gi\|116330097\|ref\|YP_799815.1\| endoflagellar protein [Leptospira borgpetersenii serovar Hardjo-bovis ...	88.0	[0..1]	[61..1]
gi\|78192938, gi\|... - gi\|78221683\|ref\|YP_383430.1\| flagellar protein [Geobacter metallireducens GS-15], gi\|78192938\|gb\|ABB...	87.0	[0..1]	[58..1]
gi\|1185052 - gi\|1185052\|gb\|AAB58961.1\| motility protein	87.0	[0..1]	[65..1]
gi\|56379605, gi\|... - gi\|56419763\|ref\|YP_147081.1\| hypothetical protein GK1228 [Geobacillus kaustophilus HTA426], gi\|56379... gi\|220708070, gi... - gi\|221088077\|ref\|ZP_03557611.1\| flagellar FlbD family protein [Geobacillus sp. Y412MC61], gi\|2207080... gi\|229329580, gi... - gi\|229499522\|ref\|ZP_04393206.1\| flagellar FlbD family protein [Geobacillus sp. Y412MC52], gi\|2293295...	87.0	[0..1]	[62..1]

Back

Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQVTRLNGT KYWINPHQIE TIECNPDVTL QMLSGKYYVI KERPEEILEA IVAYRRKIGI  60
   61 FKNEL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	40.376751
Match:	PF06289.2
Description:	No description for PF06289.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits