YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|41817409, gi\|...
Organism:	Treponema denticola ATCC 35405
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|41817409, gi|....

Description	E-value	Query Range	Subject Range
FLA2_TREPH - Flagellar filament 33 kDa core protein OS=Treponema phagedenis PE=1 SV=2	257.0	[0..1]	[286..1]
gi\|45657404, gi\|... - gi\|45657404\|ref\|YP_001490.1\| flagellin protein [Leptospira interrogans serovar Copenhageni str. Fioc...	250.0	[0..1]	[286..1]
gi\|116328165, gi... - gi\|116328165\|ref\|YP_797885.1\| endoflagellar filament core protein [Leptospira borgpetersenii serovar... gi\|116330890, gi... - gi\|116330890\|ref\|YP_800608.1\| endoflagellar filament core protein [Leptospira borgpetersenii serovar...	250.0	[0..1]	[286..1]
gi\|24196180, gi\|... - gi\|24215118\|ref\|NP_712599.1\| hook-associated protein, flagellin family [Leptospira interrogans serov...	250.0	[0..1]	[286..1]
FLAB2_TREPA, FLA... - Flagellar filament 33 kDa core protein OS=Treponema pallidum GN=flaB2 PE=1 SV=2, (P21991) Flagellar ... FLAB2_TREPA - Flagellar filament 33 kDa core protein OS=Treponema pallidum (strain Nichols) GN=flaB2 PE=1 SV=2 gi\|94602 - pir\|\|A37053 flagellar filament 33K core protein flaB2 - syphilis spirochete gi\|189026017, gi... - gi\|189026017\|ref\|YP_001933789.1\| flagellar filament 33 kDa core protein [Treponema pallidum subsp. p...	249.0	[0..1]	[286..1]
gi\|42526515, gi\|... - gi\|42526515\|ref\|NP_971613.1\| flagellar filament core protein [Treponema denticola ATCC 35405], gi\|41...	247.0	[0..1]	[286..1]
gi\|12657818 - gi\|12657818\|gb\|AAK01040.1\| endoflagellar core protein [Leptospira biflexa] gi\|12657818 - gi\|12657818\|gb\|AAK01040.1\|AF320637_1 endoflagellar core protein [Leptospira biflexa]	246.0	[0..1]	[286..1]
FLAB2_TREMA - Flagellar filament 31.3 kDa core protein OS=Treponema maltophilum GN=flaB2 PE=1 SV=1	246.0	[0..1]	[286..1]

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Predicted Domain #1

Region A:
Residues: [1-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIINHNMSAM FAQRTQGVTN VRIGKDIEKL SSGLRINRAG DDASGLAVSE KMRSQIRGLN  60
   61 QASANASNGI NFIQVAEAFL QETTDIMQRI RELAVQASNG IYSAEDRMQI QVEVSQLVAE 120
  121 VDRIASSAQF NGMNMLTGRF ARETGENVVT GSMWFHIGAN MDQRMRVYIG TMSAAALGIR 180
  181 DIGDEKIMTI ETADAANRSI GTIDEGLKKI NKQRADLGGY Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.09691
Match:	1ucuA
Description:	R-type straight flagellar filament made of full-length flagellin
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [222-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRMELTVVGI DIAAENLQAA ESRIRDADMA KQMVEYTKNQ ILSNTGIAML AQANNNSQLV  60
   61 MSLLR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.47
Match:	1ucuA
Description:	R-type straight flagellar filament made of full-length flagellin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits