YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42526722, gi\|...
Organism:	Treponema denticola ATCC 35405
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42526722, gi|....

Description	E-value	Query Range	Subject Range
gi\|110890392, gi... - gi\|111115118\|ref\|YP_709736.1\| flagellar basal body rod protein FlgC [Borrelia afzelii PKo], gi\|11089...	142.0	[0..1]	[151..1]
gi\|218249308, gi... - gi\|218249308\|ref\|YP_002374816.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi ZS7], g... gi\|221217671, gi... - gi\|221217671\|ref\|ZP_03589139.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 72a], gi... gi\|223888936, gi... - gi\|223888936\|ref\|ZP_03623527.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 64b], gi... gi\|224533191, gi... - gi\|224533191\|ref\|ZP_03673791.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi WI91-23]... gi\|225370268, gi... - gi\|225549042\|ref\|ZP_03770017.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 94a], gi... gi\|195941353 - gi\|195941353\|ref\|ZP_03086735.1\| flagellar basal body rod protein FlgC [Borrelia burgdorferi 80a] gi\|226234013, gi... - gi\|226320594\|ref\|ZP_03796154.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 29805], ... gi\|216264936, gi... - gi\|216264936\|ref\|ZP_03436928.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 156a], g... FLGC_BORBU - Flagellar basal-body rod protein FlgC OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 ... gi\|225550067, gi... - gi\|225550067\|ref\|ZP_03771027.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 118a], g... gi\|224533682, gi... - gi\|224533682\|ref\|ZP_03674270.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi CA-11.2a... FLGC_BORBU - Flagellar basal-body rod protein flgC OS=Borrelia burgdorferi GN=flgC PE=3 SV=1	141.0	[0..1]	[151..1]
gi\|51573124, gi\|... - gi\|51598553\|ref\|YP_072741.1\| flagellar basal body rod protein FlgC [Borrelia garinii PBi], gi\|515731...	138.0	[0..1]	[151..1]
gi\|1448943 - gi\|1448943\|gb\|AAB04619.1\| flagellar basal body distal rod protein	137.0	[0..1]	[151..1]
gi\|116332198, gi... - gi\|116332198\|ref\|YP_801916.1\| flagellar basal body rod protein FlgC [Leptospira borgpetersenii serov... gi\|116327145, gi... - gi\|116327145\|ref\|YP_796865.1\| flagellar basal body rod protein FlgC [Leptospira borgpetersenii serov...	131.0	[0..1]	[151..1]
gi\|45656202, gi\|... - gi\|45656202\|ref\|YP_000288.1\| flagellar basal body rod protein FlgC [Leptospira interrogans serovar C... gi\|24193737, gi\|... - gi\|24213046\|ref\|NP_710527.1\| flagellar basal body rod protein FlgC [Leptospira interrogans serovar L...	130.0	[0..1]	[151..3]
gi\|83572535, gi\|... - gi\|83589621\|ref\|YP_429630.1\| flagellar basal-body rod protein FlgC [Moorella thermoacetica ATCC 3907...	129.0	[0..1]	[151..1]
gi\|196196890, gi... - gi\|196253685\|ref\|ZP_03152300.1\| flagellar basal-body rod protein FlgC [Clostridium thermocellum DSM ... gi\|125713209, gi... - gi\|67875408\|ref\|ZP_00504748.1\| Flagellar basal-body rod protein FlgC [Clostridium thermocellum ATCC ...	123.0	[0..1]	[151..1]
gi\|2105146 - gi\|2105146\|gb\|AAB57897.1\| FlgC [Treponema denticola]	123.0	[0..1]	[151..1]
gi\|56419752, gi\|... - gi\|56419752\|ref\|YP_147070.1\| flagellar basal body rod protein FlgC [Geobacillus kaustophilus HTA426]...	120.0	[0..1]	[151..1]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLFTSINIA ATGMGVERLR TDVISNNIAN ASSLETQEGG PFKRSRVIVG QKKSGIDWQT  60
   61 PFTPQNVERG VGEGVKVLSI EKDTSDTRWV YDPTHPKALK YGPKEGYVEY PNVNIVTEMV 120
  121 DLISASRAYE ANLAVVNGAK DMFQRALDIA R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.0
Match:	1wlgA
Description:	Crystal structure of FlgE31, a major fragment of the hook protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits