YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42525812, gi\|...
Organism:	Treponema denticola ATCC 35405
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42525812, gi|....

Description	E-value	Query Range	Subject Range
gi\|20515438, gi\|... - gi\|20806959\|ref\|NP_622130.1\| glutamate formiminotransferase [Thermoanaerobacter tengcongensis MB4], ... gi\|20806959 - gi\|20806959\|ref\|NP_622130.1\| Glutamate formiminotransferase [Thermoanaerobacter tengcongensis MB4]	509.0	[0..2]	[299..1]
gi\|34396477, gi\|... - gi\|34540165\|ref\|NP_904644.1\| formiminotransferase-cyclodeaminase-related protein [Porphyromonas ging...	501.0	[0..2]	[299..3]
gi\|242256226, gi... - gi\|242256226\|ref\|ZP_04801121.1\| glutamate formiminotransferase [Thermoanaerobacter sp. X513], gi\|242... gi\|114844566, gi... - gi\|167039053\|ref\|YP_001662038.1\| glutamate formiminotransferase [Thermoanaerobacter sp. X514], gi\|16...	501.0	[0..2]	[299..1]
gi\|76797052, gi\|... - gi\|76797052\|ref\|ZP_00779395.1\| Formiminotransferase [Thermoanaerobacter ethanolicus ATCC 33223], gi\|... gi\|241904616, gi... - gi\|241904616\|ref\|ZP_04789298.1\| glutamate formiminotransferase [Thermoanaerobacter brockii subsp. fi...	499.0	[0..2]	[299..1]
gi\|71911585, gi\|... - gi\|71911585\|ref\|YP_283135.1\| glutamate formiminotransferase [Streptococcus pyogenes MGAS5005], gi\|71... gi\|15675841, gi\|... - gi\|15675841\|ref\|NP_270015.1\| glutamate formiminotransferase [Streptococcus pyogenes M1 GAS], gi\|1362... GLFT_STRP1 - Glutamate formimidoyltransferase OS=Streptococcus pyogenes serotype M1 GN=M5005_Spy1772 PE=1 SV=1	497.0	[0..2]	[298..1]
gi\|94989413, gi\|... - gi\|94989413\|ref\|YP_597514.1\| glutamate formiminotransferase [Streptococcus pyogenes MGAS9429], gi\|94... gi\|94546810, gi\|... - gi\|94993302\|ref\|YP_601401.1\| glutamate formiminotransferase [Streptococcus pyogenes MGAS2096], gi\|94...	496.0	[0..2]	[298..1]
gi\|94995260, gi\|... - gi\|94995260\|ref\|YP_603358.1\| glutamate formiminotransferase [Streptococcus pyogenes MGAS10750], gi\|9...	496.0	[0..2]	[298..1]
gi\|209560199, gi... - gi\|209560199\|ref\|YP_002286671.1\| Glutamate formiminotransferase [Streptococcus pyogenes NZ131], gi\|2... gi\|21911310, gi\|... - gi\|21911310\|ref\|NP_665578.1\| glutamate formiminotransferase [Streptococcus pyogenes MGAS315], gi\|219... gi\|94991347, gi\|... - gi\|94991347\|ref\|YP_599447.1\| glutamate formiminotransferase [Streptococcus pyogenes MGAS10270], gi\|9... gi\|28896683, gi\|... - gi\|28896683\|ref\|NP_803033.1\| glutamate formiminotransferase [Streptococcus pyogenes SSI-1], gi\|28811... gi\|71803513, gi\|... - gi\|71904418\|ref\|YP_281221.1\| glutamate formiminotransferase [Streptococcus pyogenes MGAS6180], gi\|71...	496.0	[0..2]	[298..1]
gi\|50904189, gi\|... - gi\|50915115\|ref\|YP_061087.1\| glutamate formiminotransferase [Streptococcus pyogenes MGAS10394], gi\|5...	496.0	[0..2]	[298..1]
gi\|19746956, gi\|... - gi\|19749208\|gb\|AAL98591.1\| putative formiminotransferase cyclodeaminase [Streptococcus pyogenes MGAS...	496.0	[0..2]	[298..1]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNKIIECVP NFSNGRDPEV LEKIIAPFRG KENVKLLDYE SDKDHNRSVV TVIGEPEELK  60
   61 KTVVEAIGIA ASLIDLRKHE GAHPRMGATD VVPFIPIKNS TMEECIELSK EVGKLIWEQH 120
  121 KIPVFLYEKS ASSPARENLS NIRKGQFEGM AEKVKQPEWK PDFGGTEIHP SAGVTAVGCR 180
  181 MPLVAFNVNL ATNDLSIADK IAKKVRFIGG GLRFVKAMGV DLTERGIVQV SMNMTDYTKT 240
  241 SLYQSYEMVK MEAKRYGVNV VGTEIVGLTP MAALMDVASY YLQIENFEFS QIIEARLLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	139.0
Match:	1tt9A
Description:	Structure of the bifunctional and Golgi associated formiminotransferase cyclodeaminase octamer
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits