YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39998522, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998522, gi|....

Description	E-value	Query Range	Subject Range
gi\|110287607, gi... - gi\|114151611\|ref\|YP_740454.1\| NADH dehydrogenase subunit 6 [Zea luxurians], gi\|110287607\|gb\|ABG65653...	170.0	[0..4]	[161..1]
gi\|114432108, gi... - gi\|115278617\|ref\|YP_762486.1\| NADH dehydrogenase subunit 6 [Tripsacum dactyloides], gi\|114432108\|gb\|...	160.0	[0..4]	[161..1]
gi\|114316131, gi... - gi\|114327957\|ref\|YP_745114.1\| NADH-quinone oxidoreductase chain J [Granulibacter bethesdensis CGDNIH...	148.0	[0..1]	[163..2]
gi\|72118086, gi\|... - gi\|73540673\|ref\|YP_295193.1\| NADH dehydrogenase subunit J [Ralstonia eutropha JMP134], gi\|72118086\|g...	145.0	[0..1]	[163..29]
gi\|113525855, gi... - gi\|113867079\|ref\|YP_725568.1\| NADH dehydrogenase subunit J [Ralstonia eutropha H16], gi\|113525855\|em...	140.0	[0..1]	[163..3]
gi\|67909548, gi\|... - gi\|91789107\|ref\|YP_550059.1\| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Polaromonas sp. ...	140.0	[0..3]	[163..5]
gi\|107023179, gi... - gi\|67660963\|ref\|ZP_00458296.1\| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Burkholderia c... gi\|170733600, gi... - gi\|170733600\|ref\|YP_001765547.1\| NADH dehydrogenase subunit J [Burkholderia cenocepacia MC0-3], gi\|1... gi\|116690261, gi... - gi\|67662024\|ref\|ZP_00459315.1\| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Burkholderia c...	139.0	[0..3]	[163..5]
gi\|114309668, gi... - gi\|115278547\|ref\|YP_762337.1\| NADH dehydrogenase subunit 6 [Sorghum bicolor], gi\|114309668\|gb\|ABI608...	139.0	[0..4]	[161..1]
gi\|194558651, gi... - gi\|84355271\|ref\|ZP_00980159.1\| COG0839: NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Burkhold...	139.0	[0..3]	[163..5]
gi\|77967782, gi\|... - gi\|78067037\|ref\|YP_369806.1\| NADH dehydrogenase subunit J [Burkholderia sp. 383], gi\|77967782\|gb\|ABB...	138.0	[0..3]	[163..5]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQALFYILA AVTVIATVLA ITEKHAVHAI VYLVTSFFAL AVIFFTLGAP VVAVFEVIIY  60
   61 AGAIMVLFLF VIMMLDLGHP ERARRPGIRD WWPALALGAV TLASALTLLI SRAQAASAAG 120
  121 RAIGVKEFAL TLFGKYGVAV EVISMQLLFA LVGALYLAKR RER

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	27.69897
Match:	PF00499.11
Description:	No description for PF00499.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits