YRC Public Data Repository - Protein Structure Prediction

Protein:	ISPD_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ISPD_GEOSL.

Description	E-value	Query Range	Subject Range
gi\|1098479 - gi\|1098479\|gb\|AAC37050.1\| glucose-1-phosphate thymidyl transferase [Neisseria meningitidis]	176.0	[0..2]	[228..13]
gi\|33637041 - gi\|33637041\|gb\|AAQ23679.1\| glucose-1-phosphate thymidyltransferase [Geobacillus stearothermophilus]	174.0	[0..3]	[227..1]
gi\|45250012 - gi\|45250012\|gb\|AAS55725.1\| glucose-1-phosphate thymidyltransferase [Aneurinibacillus thermoaerophilu...	174.0	[0..3]	[228..1]
gi\|11261719 - pir\|\|B81240 glucose-1-phosphate thymidylyltransferase NMB0080, NMB0062 [imported] - Neisseria mening... RMLA_NEIMB - Glucose-1-phosphate thymidylyltransferase OS=Neisseria meningitidis serogroup B (strain MC58) GN=rml... RMLA_NEIMB - Glucose-1-phosphate thymidylyltransferase OS=Neisseria meningitidis serogroup B GN=rmlA1 PE=3 SV=2	174.0	[0..3]	[228..1]
gi\|34811708, gi\|... - gi\|34811708\|pdb\|1H5S\|B Chain B, Thymidylyltransferase Complexed With Tmp, gi\|21466153\|pdb\|1H5T\|B Cha...	173.0	[0..1]	[228..1]
gi\|68196230, gi\|... - gi\|69244639\|ref\|ZP_00602903.1\| Glucose-1-phosphate thymidylyltransferase, long form [Enterococcus fa... gi\|48826109 - ref\|ZP_00287334.1\| COG1209: dTDP-glucose pyrophosphorylase [Enterococcus faecium]	173.0	[0..3]	[227..1]
gi\|56459651, gi\|... - gi\|56459651\|ref\|YP_154932.1\| dTDP-glucose pyrophosphorylase [Idiomarina loihiensis L2TR], gi\|5617866...	173.0	[0..3]	[227..1]
gi\|71906877, gi\|... - gi\|71906877\|ref\|YP_284464.1\| glucose-1-phosphate thymidylyltransferase [Dechloromonas aromatica RCB]...	173.0	[0..4]	[228..6]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVFALVPAA GMGKRMGASI NKQYLILAGR PILAHTLSVF EGASFVDGIF VITPEDEIPF  60
   61 CRDHVVERYG FTKVRGIVAG GAERQHSVLN GLRAMEGTVA DDDVILIHDG VRPFVSTDVL 120
  121 ARATAVARED DGALVAVPAK DTVKTVEDGI ITGTPPRETL WLAQTPQAFR YAVIRAAHEI 180
  181 ADAERFLGTD DAMLVERLGR SVRIVVGDYR NIKITTPEDM VLAEAFLKEL AA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.0
Match:	1vgtA
Description:	Crystal structure of 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	2.01680144494637	bayes_pls_golite062009
catalytic activity	1.88676710996045	bayes_pls_golite062009
transferase activity	1.47184463413038	bayes_pls_golite062009
nucleotidyltransferase activity	1.03393419806381	bayes_pls_golite062009
cytidylyltransferase activity	0.983416157001861	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	0.651454753851031	bayes_pls_golite062009
UDP-glycosyltransferase activity	0.423789091098118	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.361674579616957	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: