YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39985236, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39985236, gi|....

Description	E-value	Query Range	Subject Range
gi\|48844352, gi\|... - gi\|78224401\|ref\|YP_386148.1\| CheC, inhibitor of MCP methylation [Geobacter metallireducens GS-15], g...	209.0	[0..1]	[204..1]
gi\|83572568, gi\|... - gi\|83589654\|ref\|YP_429663.1\| CheC, inhibitor of MCP methylation [Moorella thermoacetica ATCC 39073],...	203.0	[0..3]	[204..11]
gi\|22777263, gi\|... - gi\|23099035\|ref\|NP_692501.1\| hypothetical protein OB1580 [Oceanobacillus iheyensis HTE831], gi\|22777...	198.0	[0..1]	[203..1]
gi\|25352013 - pir\|\|B83954 inhibition of CheR-mediated methylation of MCPs cheC [imported] - Bacillus halodurans (s... gi\|15614997, gi\|... - gi\|15614997\|ref\|NP_243300.1\| inhibition of CheR-mediated methylation of MCPs [Bacillus halodurans C-...	194.0	[0..2]	[204..3]
gi\|67850626, gi\|... - gi\|67875437\|ref\|ZP_00504777.1\| CheC-like protein [Clostridium thermocellum ATCC 27405], gi\|67850626\|...	193.0	[0..1]	[202..3]
gi\|56419779, gi\|... - gi\|56419779\|ref\|YP_147097.1\| chemotactic methyltransferase inhibitor [Geobacillus kaustophilus HTA42...	192.0	[0..2]	[203..3]
gi\|20807862, gi\|... - gi\|20807862\|ref\|NP_623033.1\| chemotaxis protein CheC, inhibitor of MCP methylation [Thermoanaerobact... gi\|20807862 - gi\|20807862\|ref\|NP_623033.1\| Chemotaxis protein CheC, inhibitor of MCP methylation [Thermoanaerobact...	191.0	[0..1]	[204..4]
gi\|106894615, gi... - gi\|158320540\|ref\|YP_001513047.1\| CheC, inhibitor of MCP methylation [Alkaliphilus oremlandii OhILAs]...	186.0	[0..1]	[202..3]
gi\|89098618, gi\|... - gi\|89098618\|ref\|ZP_01171500.1\| chemotactic methyltransferase inhibitor [Bacillus sp. NRRL B-14911], ...	186.0	[0..6]	[202..12]
gi\|28211382, gi\|... - gi\|28211382\|ref\|NP_782326.1\| chemotaxis protein cheC [Clostridium tetani E88], gi\|28203823\|gb\|AAO362...	186.0	[0..1]	[202..3]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFDALTEEH LDALKEVSNI GVAHAATALS QLIGKGITLQ VPKVHLMKIT EVPEAFGGAE  60
   61 RIVVGIYLQM LGDARGNILI VLPRESALKL LSRLLPREKS EGSLLTELEI SALKEVGNIL 120
  121 ASAYLNALGA LMRKTLIPSV PVLSFDMAGA VIDYVLIELG EVGDLALMVE TEFFGEEEKI 180
  181 GGQFFLLPDP ESLRIILDAI GVKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.221849
Match:	1xkrA
Description:	X-ray Structure of Thermotoga maritima CheC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits