YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39998287, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998287, gi|....

Description	E-value	Query Range	Subject Range
gi\|83589593, gi\|... - gi\|83589593\|ref\|YP_429602.1\| CheW protein [Moorella thermoacetica ATCC 39073], gi\|83572507\|gb\|ABC190...	123.0	[0..2]	[137..5]
gi\|88773938, gi\|... - gi\|88794813\|ref\|ZP_01110518.1\| chemotaxis protein CheW [Alteromonas macleodii 'Deep ecotype'], gi\|88...	123.0	[0..2]	[135..14]
gi\|39982169, gi\|... - gi\|39995406\|ref\|NP_951357.1\| purine-binding chemotaxis protein CheW [Geobacter sulfurreducens PCA], ...	118.0	[0..3]	[138..14]
gi\|227118506, gi... - gi\|227118506\|ref\|YP_002820402.1\| purine-binding chemotaxis protein CheW [Vibrio cholerae O395], gi\|2... gi\|229355356, gi... - gi\|229507851\|ref\|ZP_04397356.1\| positive regulator of CheA protein activity (CheW) [Vibrio cholerae ... gi\|227010074, gi... - gi\|227082186\|ref\|YP_002810737.1\| purine-binding chemotaxis protein CheW [Vibrio cholerae M66-2], gi\|... gi\|229370051, gi... - gi\|229607396\|ref\|YP_002878044.1\| positive regulator of CheA protein activity (CheW) [Vibrio cholerae... gi\|229332697, gi... - gi\|229528923\|ref\|ZP_04418313.1\| positive regulator of CheA protein activity (CheW) [Vibrio cholerae ... gi\|229519049, gi... - gi\|229519049\|ref\|ZP_04408492.1\| positive regulator of CheA protein activity (CheW) [Vibrio cholerae ... gi\|229513715, gi... - gi\|229513715\|ref\|ZP_04403177.1\| positive regulator of CheA protein activity (CheW) [Vibrio cholerae ... gi\|11356047 - pir\|\|E82122 purine-binding chemotaxis protein CheW VC2059 [imported] - Vibrio cholerae (strain N1696... gi\|121727373, gi... - gi\|121727373\|ref\|ZP_01680512.1\| purine-binding chemotaxis protein CheW [Vibrio cholerae V52], gi\|121... gi\|121586935, gi... - gi\|121586935\|ref\|ZP_01676715.1\| purine-binding chemotaxis protein CheW [Vibrio cholerae 2740-80], gi... gi\|254849146, gi... - gi\|254849146\|ref\|ZP_05238496.1\| purine-binding chemotaxis protein CheW [Vibrio cholerae MO10], gi\|25... gi\|124119051, gi... - gi\|153222191\|ref\|ZP_01952970.1\| purine-binding chemotaxis protein CheW [Vibrio cholerae MAK 757], gi... gi\|153213707, gi... - gi\|153213707\|ref\|ZP_01948959.1\| purine-binding chemotaxis protein CheW [Vibrio cholerae 1587], gi\|12... gi\|254286820, gi... - gi\|254286820\|ref\|ZP_04961773.1\| purine-binding chemotaxis protein CheW [Vibrio cholerae AM-19226], g... gi\|126520778, gi... - gi\|229511913\|ref\|ZP_04401392.1\| positive regulator of CheA protein activity (CheW) [Vibrio cholerae ... gi\|153828899, gi... - gi\|153828899\|ref\|ZP_01981566.1\| purine-binding chemotaxis protein CheW [Vibrio cholerae 623-39], gi\|... gi\|183013114, gi... - gi\|183179703\|ref\|ZP_02957914.1\| purine-binding chemotaxis protein CheW [Vibrio cholerae MZO-3], gi\|1... gi\|15642059, gi\|... - gi\|9656605\|gb\|AAF95205.1\| purine-binding chemotaxis protein CheW [Vibrio cholerae O1 biovar El Tor s... gi\|153819536, gi... - gi\|153819536\|ref\|ZP_01972203.1\| purine-binding chemotaxis protein CheW [Vibrio cholerae NCTC 8457], ... gi\|153826057, gi... - gi\|153826057\|ref\|ZP_01978724.1\| purine-binding chemotaxis protein CheW [Vibrio cholerae MZO-2], gi\|1...	118.0	[0..2]	[135..25]
gi\|76874678, gi\|... - gi\|77359767\|ref\|YP_339342.1\| purine-binding chemotaxis protein [Pseudoalteromonas haloplanktis TAC12...	118.0	[0..2]	[135..16]
gi\|76791972, gi\|... - gi\|76791972\|ref\|ZP_00774475.1\| CheW-like protein [Pseudoalteromonas atlantica T6c], gi\|76592661\|gb\|E...	118.0	[0..2]	[135..15]
gi\|37199389, gi\|... - gi\|37680641\|ref\|NP_935250.1\| chemotaxis signal transduction protein [Vibrio vulnificus YJ016], gi\|37... gi\|27361451, gi\|... - gi\|27365304\|ref\|NP_760832.1\| chemotaxis signal transduction protein [Vibrio vulnificus CMCP6], gi\|27...	118.0	[0..2]	[135..15]
gi\|85712294, gi\|... - gi\|85712294\|ref\|ZP_01043345.1\| Chemotaxis protein CheW [Idiomarina baltica OS145], gi\|85693921\|gb\|EA...	118.0	[0..2]	[135..17]
gi\|49081072 - gi\|49081072\|gb\|AAT50090.1\| PA1464 [synthetic construct]	117.0	[0..3]	[135..11]
gi\|146399929, gi... - gi\|88935803\|ref\|ZP_01141428.1\| CheW-like protein [Geobacter uraniumreducens Rf4], gi\|88917429\|gb\|EAR...	117.0	[0..1]	[138..12]

Back

Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDRMDRYVI FTVTDRKLAL PLDKTAEVLE GAATHPVPAV PPLLGRALNV HGRIVPALDL  60
   61 ATFLHGGAIG RNHAFLALNH HVADLALLVE GPVAIVSVEE SDRSPSEHPR FEGYLEIAGE 120
  121 RVGILATGRL IEEVEEIL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.045757
Match:	2ho9A
Description:	No description for 2ho9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits