YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39985226, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	78 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39985226, gi|....

Description	E-value	Query Range	Subject Range
gi\|2367310, gi\|4... - gi\|49176427\|ref\|NP_418280.3\| twin argininte translocase protein A [Escherichia coli K12], gb\|AAC7683... gi\|81243131, gi\|... - gi\|82778983\|ref\|YP_405332.1\| twin argininte translocase protein A [Shigella dysenteriae Sd197], gi\|8... gi\|26250604, gi\|... - gi\|26250604\|ref\|NP_756644.1\| twin argininte translocase protein A [Escherichia coli CFT073], gi\|2611... gi\|81247600, gi\|... - gi\|82546189\|ref\|YP_410136.1\| twin argininte translocase protein A [Shigella boydii Sb227], gi\|812476... gi\|30043127, gi\|... - gi\|30064867\|ref\|NP_839038.1\| twin argininte translocase protein A [Shigella flexneri 2a str. 2457T],... gi\|110617020, gi... - gi\|110807472\|ref\|YP_690992.1\| twin argininte translocase protein A [Shigella flexneri 5 str. 8401], ... gi\|115515240, gi... - gi\|117626116\|ref\|YP_859439.1\| twin argininte translocase protein A [Escherichia coli APEC O1], gi\|11... gi\|3193217, gi\|2... - gi\|7444818\|pir\|\|E65188 hypothetical 11.3 kD protein in udp-rfaH intergenic region - Escherichia coli... gi\|24054404, gi\|... - gi\|24115132\|ref\|NP_709642.1\| twin argininte translocase protein A [Shigella flexneri 2a str. 301], g... gi\|237702871, gi... - gi\|237702871\|ref\|ZP_04533352.1\| twin argininte translocase A [Escherichia sp. 3_2_53FAA], gi\|2269030...	88.0	[0..1]	[73..1]
gi\|91213385, gi\|... - gi\|91213385\|ref\|YP_543371.1\| twin argininte translocase protein A [Escherichia coli UTI89], gi\|91074...	87.0	[0..1]	[73..1]
gi\|73857826, gi\|... - gi\|74314349\|ref\|YP_312768.1\| twin argininte translocase protein A [Shigella sonnei Ss046], gi\|738578...	87.0	[0..1]	[73..1]
gi\|25302684 - gi\|25302684\|pir\|\|D86071 hypothetical protein tatA [imported] - Escherichia coli (strain O157:H7, su... gi\|15804428, gi\|... - gi\|15804428\|ref\|NP_290468.1\| twin argininte translocase protein A [Escherichia coli O157:H7 EDL933],...	86.0	[0..1]	[73..1]
gi\|162459022, gi... - gi\|4877986\|gb\|AAD31523.1\|AF145756_1 THA9 [Zea mays], gi\|162459022\|ref\|NP_001104943.1\| tha9 protein [...	85.0	[0..11]	[71..70]
TATB_BORA1 - Sec-independent protein translocase protein TatB OS=Bordetella avium (strain 197N) GN=tatB PE=3 SV=1	85.0	[0..16]	[76..1]
TATA_ORYSJ - Sec-independent protein translocase protein TATA, chloroplastic OS=Oryza sativa subsp. japonica GN=T...	85.0	[0..12]	[71..80]
gi\|86167411, gi\|... - gi\|87125091\|ref\|ZP_01080938.1\| Twin-arginine translocation protein TatA/E [Synechococcus sp. RS9917]...	84.0	[0..14]	[78..1]
TATA_PEA - Sec-independent protein translocase protein TATA, chloroplastic OS=Pisum sativum GN=TATA PE=1 SV=1	84.0	[0..11]	[74..53]
TATA_ARATH - Sec-independent protein translocase protein TATA, chloroplastic OS=Arabidopsis thaliana GN=TATA PE=1...	84.0	[0..11]	[72..58]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYSLTTLWF FGGYCMFGFG MPELIVILII VLVVFGAGRL PEIGGALGKS IRNFKKASEG  60
   61 KEEIEIKPQK KDEPKKDA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	18.251812
Match:	PF02416.7
Description:	No description for PF02416.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits