YRC Public Data Repository - Protein Structure Prediction

Protein:	MSRA_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSRA_GEOSL.

Description	E-value	Query Range	Subject Range
gi\|22294607, gi\|... - gi\|22298428\|ref\|NP_681675.1\| methionine sulfoxide reductase A [Thermosynechococcus elongatus BP-1], ...	273.0	[0..5]	[160..46]
MSRA_METTH - Peptide methionine sulfoxide reductase MsrA OS=Methanothermobacter thermautotrophicus (strain ATCC 2... gi\|7446679 - gi\|7446679\|pir\|\|F69170 peptide methionine sulfoxide reductase - Methanobacterium thermoautotrophicum...	272.0	[0..8]	[160..8]
gi\|86607734 - gi\|86607734\|ref\|YP_476496.1\| methionine-S-sulfoxide reductase [Cyanobacteria bacterium Yellowstone B... gi\|86556276, gi\|... - gi\|86607734\|ref\|YP_476496.1\| methionine-S-sulfoxide reductase [Synechococcus sp. JA-2-3B'a(2-13)], g...	271.0	[0..5]	[160..48]
gi\|86605185, gi\|... - gi\|86605185\|ref\|YP_473948.1\| methionine-S-sulfoxide reductase [Cyanobacteria bacterium Yellowstone A... gi\|86605185, gi\|... - gi\|86605185\|ref\|YP_473948.1\| methionine-S-sulfoxide reductase [Synechococcus sp. JA-3-3Ab], gi\|86553...	271.0	[0..5]	[160..48]
gi\|88939647, gi\|... - gi\|88939647\|ref\|ZP_01145094.1\| peptide methionine sulfoxide reductase [Acidiphilium cryptum JF-5], g...	269.0	[0..5]	[160..51]
gi\|84668247, gi\|... - gi\|84683504\|ref\|ZP_01011407.1\| Peptide methionine sulfoxide reductase [Rhodobacterales bacterium HTC...	269.0	[0..1]	[160..39]
gi\|113945877, gi... - gi\|113945877\|ref\|ZP_01431571.1\| peptide methionine sulfoxide reductase [Salinispora tropica CNB-440]...	269.0	[0..5]	[161..206]
gi\|115374225, gi... - gi\|115374225\|ref\|ZP_01461511.1\| methionine-S-sulfoxide reductase [Stigmatella aurantiaca DW4/3-1], g...	268.0	[0..5]	[160..20]
gi\|186684368, gi... - gi\|23126307\|ref\|ZP_00108208.1\| COG0225: Peptide methionine sulfoxide reductase [Nostoc punctiforme P...	268.0	[0..6]	[160..46]
gi\|91075350, gi\|... - gi\|91213776\|ref\|YP_543762.1\| methionine sulfoxide reductase A [Escherichia coli UTI89], gi\|91075350\|... gi\|226901808, gi... - gi\|237703896\|ref\|ZP_04534377.1\| methionine sulfoxide reductase A [Escherichia sp. 3_2_53FAA], gi\|226... gi\|254037239, gi... - gi\|254037239\|ref\|ZP_04871316.1\| methionine sulfoxide reductase A [Escherichia sp. 1_1_43], gi\|226840...	267.0	[0..6]	[156..64]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGENTSLEKA TFGAGCFWHV EEEFRRVPGV VSTLAGYMGG WKEHPTYEEV CSKTTGHAEV  60
   61 VEVTFDPAAV TYDHLLRVFW DCHDPTQLNR QGPDIGTNYR SVIFYHSPDQ ERAARASLEH 120
  121 EQRSGRHARP IVTEIVPAAT FWWAEEYHQH YLEKRGGGSC RW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.522879
Match:	2gt3A
Description:	No description for 2gt3A was found.

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor	7.33214277590189	bayes_pls_golite062009
peptide-methionine-(S)-S-oxide reductase activity	7.05871760837663	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	4.45221508174489	bayes_pls_golite062009
catalytic activity	2.02168745464921	bayes_pls_golite062009
binding	1.21670366786992	bayes_pls_golite062009
protein binding	0.0950083680136139	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: