YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39998245, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998245, gi|....

Description	E-value	Query Range	Subject Range
gi\|75815650 - gi\|75815650\|ref\|ZP_00746148.1\| COG3005: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome... gi\|75827046 - gi\|75827046\|ref\|ZP_00756481.1\| COG3005: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome...	191.0	[0..3]	[133..23]
gi\|75820132, gi\|... - gi\|75820132\|ref\|ZP_00750187.1\| COG3005: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome...	191.0	[0..3]	[133..23]
gi\|9656210, gi\|1... - gi\|9656210\|gb\|AAF94843.1\| cytochrome c-type protein TorC [Vibrio cholerae O1 biovar El Tor str. N169... gi\|11248838 - pir\|\|H82168 cytochrome c-type protein TorC VC1693 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|229343392, gi... - gi\|229518703\|ref\|ZP_04408146.1\| cytochrome c-type protein TorY [Vibrio cholerae RC9], gi\|229343392\|g... gi\|229370426, gi... - gi\|229607771\|ref\|YP_002878419.1\| cytochrome c-type protein TorY [Vibrio cholerae MJ-1236], gi\|229370... gi\|121548788, gi... - gi\|121586953\|ref\|ZP_01676732.1\| cytochrome c-type protein TorC [Vibrio cholerae 2740-80], gi\|1215487... gi\|227081842, gi... - gi\|227081842\|ref\|YP_002810393.1\| cytochrome c-type protein TorC [Vibrio cholerae M66-2], gi\|22700973... gi\|229508198, gi... - gi\|229508198\|ref\|ZP_04397703.1\| cytochrome c-type protein TorY [Vibrio cholerae BX 330286], gi\|22935... gi\|254848811, gi... - gi\|254848811\|ref\|ZP_05238161.1\| cytochrome c-type protein TorC [Vibrio cholerae MO10], gi\|254844516\|... gi\|153221756, gi... - gi\|153221756\|ref\|ZP_01952641.1\| cytochrome c-type protein TorC [Vibrio cholerae MAK 757], gi\|1241193... gi\|229511564, gi... - gi\|229511564\|ref\|ZP_04401043.1\| cytochrome c-type protein TorY [Vibrio cholerae B33], gi\|229351529\|g... gi\|153817145, gi... - gi\|153817145\|ref\|ZP_01969812.1\| cytochrome c-type protein TorC [Vibrio cholerae NCTC 8457], gi\|12651...	190.0	[0..3]	[133..30]
gi\|75824393, gi\|... - gi\|75824393\|ref\|ZP_00753848.1\| COG3005: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome...	190.0	[0..3]	[133..23]
gi\|75831029, gi\|... - gi\|75831029\|ref\|ZP_00760297.1\| COG3005: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome...	189.0	[0..3]	[133..23]
gi\|27362375, gi\|... - gi\|27366175\|ref\|NP_761703.1\| nitrate/TMAO reductase, membrane-bound tetraheme cytochrome c subunit [... gi\|37198302, gi\|... - gi\|37679558\|ref\|NP_934167.1\| cytochrome c-type protein TorC [Vibrio vulnificus YJ016], gi\|37198302\|d...	185.0	[0..3]	[133..30]
gi\|89073994, gi\|... - gi\|89073994\|ref\|ZP_01160500.1\| putative cytochrome c-type protein TorC [Photobacterium sp. SKA34], g...	184.0	[0..3]	[133..30]
gi\|91189449, gi\|... - gi\|91226008\|ref\|ZP_01260935.1\| cytochrome c-type protein TorC [Vibrio alginolyticus 12G01], gi\|91189...	184.0	[0..3]	[133..30]
gi\|151937602, gi... - gi\|75855708\|ref\|ZP_00763352.1\| COG3005: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome...	184.0	[0..3]	[133..30]
gi\|84376475, gi\|... - gi\|84391762\|ref\|ZP_00991664.1\| cytochrome c-type protein TorC [Vibrio splendidus 12B01], gi\|84376475...	183.0	[0..3]	[133..30]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVAAFALVG PPRLLEHSES PAFCAGCHVM GEQHEAWSHA GAHRRIRCVD CHLPNGNPVA  60
   61 HYVWKSIDGM KDVVAFYSGH VPDPIKLSSH GAKVVQQNCV RCHEATVTTM DRTRQCWGCH 120
  121 RQLRHKLTGA MATR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	2j7aC
Description:	No description for 2j7aC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits