YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39998237, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998237, gi|....

Description	E-value	Query Range	Subject Range
gi\|33634166, gi\|... - gi\|33861589\|ref\|NP_893150.1\| cobalamin synthesis protein/P47K [Prochlorococcus marinus subsp. pastor...	148.0	[0..2]	[161..7]
gi\|52784564, gi\|... - gi\|52784564\|ref\|YP_090393.1\| YciC [Bacillus licheniformis ATCC 14580], gi\|52347066\|gb\|AAU39700.1\| Yc...	148.0	[0..2]	[165..5]
gi\|65319335 - gi\|65319335\|ref\|ZP_00392294.1\| COG0523: Putative GTPases (G3E family) [Bacillus anthracis str. A2012... gi\|167633015, gi... - gi\|167633015\|ref\|ZP_02391341.1\| cobalamin synthesis protein/P47K family protein [Bacillus anthracis ... gi\|170706109, gi... - gi\|170706109\|ref\|ZP_02896571.1\| cobalamin synthesis protein/P47K family protein [Bacillus anthracis ... gi\|172083195, gi... - gi\|177650734\|ref\|ZP_02933631.1\| cobalamin synthesis protein/P47K family protein [Bacillus anthracis ... gi\|167638425, gi... - gi\|167638425\|ref\|ZP_02396702.1\| cobalamin synthesis protein/P47K family protein [Bacillus anthracis ... gi\|170686414, gi... - gi\|170686414\|ref\|ZP_02877635.1\| cobalamin synthesis protein/P47K family protein [Bacillus anthracis ... gi\|49178818, gi\|... - gi\|49184891\|ref\|YP_028143.1\| cobalamin synthesis protein/P47K family protein [Bacillus anthracis str...	148.0	[0..1]	[161..4]
gi\|78779427, gi\|... - gi\|78779427\|ref\|YP_397539.1\| cobalamin synthesis protein/P47K [Prochlorococcus marinus str. MIT 9312...	148.0	[0..2]	[161..7]
YCIC_BACSU - Putative metal chaperone YciC OS=Bacillus subtilis (strain 168) GN=yciC PE=2 SV=1 gi\|221312473 - gi\|221312473\|ref\|ZP_03594278.1\| hypothetical protein BsubsN3_01886 [Bacillus subtilis subsp. subtili... gi\|221317406 - gi\|221317406\|ref\|ZP_03598700.1\| hypothetical protein BsubsJ_01873 [Bacillus subtilis subsp. subtilis... YCIC_BACSU - Putative metal chaperone YciC OS=Bacillus subtilis GN=yciC PE=2 SV=1 gi\|221321669 - gi\|221321669\|ref\|ZP_03602963.1\| hypothetical protein BsubsS_01904 [Bacillus subtilis subsp. subtilis...	148.0	[0..2]	[165..4]
gi\|254734921 - gi\|254734921\|ref\|ZP_05192633.1\| cobalamin synthesis protein/P47K family protein [Bacillus anthracis ... gi\|254721372 - gi\|254721372\|ref\|ZP_05183162.1\| cobalamin synthesis protein/P47K family protein [Bacillus anthracis ... gi\|190569177, gi... - gi\|190569177\|ref\|ZP_03022074.1\| cobalamin synthesis protein/P47K family protein [Bacillus anthracis ... gi\|254684613 - gi\|254684613\|ref\|ZP_05148473.1\| cobalamin synthesis protein/P47K family protein [Bacillus anthracis ... gi\|229601807, gi... - gi\|229601807\|ref\|YP_002866415.1\| cobalamin synthesis protein/P47K family protein [Bacillus anthracis... gi\|47502467, gi\|... - gi\|47527319\|ref\|YP_018668.1\| cobalamin synthesis protein/P47K family protein [Bacillus anthracis str... gi\|165870228, gi... - gi\|165870228\|ref\|ZP_02214884.1\| cobalamin synthesis protein/P47K family protein [Bacillus anthracis ... gi\|254760112 - gi\|254760112\|ref\|ZP_05212136.1\| cobalamin synthesis protein/P47K family protein [Bacillus anthracis ... gi\|30256674, gi\|... - gi\|30262048\|ref\|NP_844425.1\| cobalamin synthesis protein/P47K family protein [Bacillus anthracis str... gi\|254750872 - gi\|254750872\|ref\|ZP_05202911.1\| cobalamin synthesis protein/P47K family protein [Bacillus anthracis ... gi\|21399900 - ref\|NP_655885.1\| cobW, Cobalamin synthesis protein/P47K [Bacillus anthracis str. A2012] gi\|254741319 - gi\|254741319\|ref\|ZP_05199007.1\| cobalamin synthesis protein/P47K family protein [Bacillus anthracis ... gi\|227006080, gi... - gi\|227815154\|ref\|YP_002815163.1\| cobalamin synthesis protein/P47K family protein [Bacillus anthracis...	148.0	[0..1]	[161..1]
gi\|42781167, gi\|... - gi\|42781167\|ref\|NP_978414.1\| cobalamin synthesis protein/P47K family protein [Bacillus cereus ATCC 1...	147.0	[0..1]	[161..1]
gi\|33867012, gi\|... - gi\|33867012\|ref\|NP_898571.1\| hypothetical protein SYNW2482 [Synechococcus sp. WH 8102], gi\|33639613\|...	147.0	[0..2]	[163..7]
gi\|229144662, gi... - gi\|229144662\|ref\|ZP_04273063.1\| Cobalamin synthesis protein [Bacillus cereus BDRD-ST24], gi\|22863879... gi\|229127454, gi... - gi\|229127454\|ref\|ZP_04256447.1\| Cobalamin synthesis protein [Bacillus cereus BDRD-Cer4], gi\|22865599... gi\|228673930, gi... - gi\|229109511\|ref\|ZP_04239102.1\| Cobalamin synthesis protein [Bacillus cereus Rock1-15], gi\|228673930... gi\|30020156, gi\|... - gi\|30020156\|ref\|NP_831787.1\| zinc transporter [Bacillus cereus ATCC 14579], gi\|29895706\|gb\|AAP08988.... gi\|228838864, gi... - gi\|228920753\|ref\|ZP_04084093.1\| Cobalamin synthesis protein [Bacillus thuringiensis serovar huazhong...	147.0	[0..1]	[161..4]
gi\|52143402, gi\|... - gi\|52143402\|ref\|YP_083428.1\| cobalamin synthesis protein [Bacillus cereus E33L], gi\|51976871\|gb\|AAU1...	147.0	[0..1]	[161..4]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKAISFVAK SGTGKTTLLE KVIAELKSRG YRVGAIKHDA HRFDIDHPGK DSYRLTAAGA  60
   61 DTMLISSPEK LAVVKKHEVS PPIEELIATY FGDVDIIITE GFKKSGLPKI EVHRRERSTT 120
  121 LLCRGEQHDP TLLAVASDEP LELDVPVLDL NDPKQVADFV EERFLTQRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	1np6A
Description:	Molybdopterin-guanine dinucleotide biosynthesis protein MobB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits