YRC Public Data Repository - Protein Structure Prediction

Protein:	LSPA_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSPA_GEOSL.

Description	E-value	Query Range	Subject Range
LSPA_GEOMG - Lipoprotein signal peptidase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=...	188.0	[0..1]	[159..1]
gi\|74277650, gi\|... - gi\|75428558\|ref\|ZP_00731760.1\| Signal peptidase II [Actinobacillus succinogenes 130Z], gi\|74277650\|g...	178.0	[0..2]	[159..29]
gi\|110601390, gi... - gi\|110601390\|ref\|ZP_01389579.1\| lipoprotein signal peptidase [Geobacter sp. FRC-32], gi\|110547899\|gb...	178.0	[0..1]	[158..38]
gi\|71740272, gi\|... - gi\|71839213\|ref\|ZP_00678965.1\| Peptidase A8, signal peptidase II [Pelobacter propionicus DSM 2379], ...	177.0	[0..4]	[157..31]
gi\|71161643, gi\|... - gi\|93006180\|ref\|YP_580617.1\| lipoprotein signal peptidase [Psychrobacter cryohalolentis K5], gi\|9239...	177.0	[0..4]	[158..77]
gi\|114773698 - gi\|114773698\|ref\|ZP_01450729.1\| signal peptidase II [alpha proteobacterium HTCC2255] gi\|221135354 - gi\|221135354\|ref\|ZP_03561657.1\| signal peptidase II [Glaciecola sp. HTCC2999] gi\|114773698, gi... - gi\|114773698\|ref\|ZP_01450729.1\| signal peptidase II [alpha proteobacterium HTCC2255], gi\|114546093\|g...	175.0	[0..1]	[160..22]
gi\|148653690, gi... - gi\|91769764\|ref\|ZP_01271596.1\| Signal peptidase II [Psychrobacter sp. PRwf-1], gi\|91721251\|gb\|EAS871...	175.0	[0..3]	[158..39]
gi\|85693905, gi\|... - gi\|85712278\|ref\|ZP_01043329.1\| Lipoprotein signal peptidase [Idiomarina baltica OS145], gi\|85693905\|...	174.0	[0..8]	[157..18]
LSPA_SHELP - Lipoprotein signal peptidase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=lspA PE=3 SV=1	174.0	[0..2]	[157..6]
gi\|46133238 - gi\|46133238\|ref\|ZP_00156863.2\| COG0597: Lipoprotein signal peptidase [Haemophilus influenzae R2866] LSPA_HAEIN - Lipoprotein signal peptidase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) G... LSPA_HAEIN - Lipoprotein signal peptidase OS=Haemophilus influenzae GN=lspA PE=3 SV=1 gi\|144984383 - gi\|144984383\|gb\|EDJ91806.1\| lipoprotein signal peptidase [Haemophilus influenzae R3021] gi\|145638174, gi... - gi\|145638174\|ref\|ZP_01793784.1\| signal peptidase II [Haemophilus influenzae PittII], gi\|145272503\|gb... gi\|145630102 - gi\|145630102\|ref\|ZP_01785884.1\| lipoprotein signal peptidase [Haemophilus influenzae 22.4-21]	174.0	[0..2]	[158..3]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPTYRIFNA VVLGSLVLDQ ATKVLIDRTM DLYQSIPVID GLFSITYLRN RGAAFSFLAD  60
   61 FSYRLPFFIL VSVVALGVIA VTFRKLRDDQ HLAAAALALI FSGALGNLID RVRLGEVIDF 120
  121 LDVYWKTYHW PAFNVADSAI CVGVALLAVD MIREERRKAP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.721246
Match:	PF01252.9
Description:	No description for PF01252.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits