YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39998136, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998136, gi|....

Description	E-value	Query Range	Subject Range
gi\|78221657, gi\|... - gi\|78221657\|ref\|YP_383404.1\| anti-sigma-28 factor, FlgM [Geobacter metallireducens GS-15], gi\|781929...	126.0	[0..5]	[92..5]
gi\|222053737, gi... - gi\|222053737\|ref\|YP_002536099.1\| Anti-sigma-28 factor FlgM family protein [Geobacter sp. FRC-32], gi...	49.0	[0..26]	[91..17]
gi\|94264034, gi\|... - gi\|94266380\|ref\|ZP_01290079.1\| Anti-sigma-28 factor, FlgM [delta proteobacterium MLMS-1], gi\|9426403...	47.0	[0..22]	[93..19]
gi\|89083864, gi\|... - gi\|89092129\|ref\|ZP_01165084.1\| negative regulator of flagellin synthesis FlgM, putative [Oceanospiri...	45.0	[0..5]	[91..3]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIDNDIVSL SSVGALPVAP PKADAGQAAA AGTTPVAERV ELSIGKSAID SLKDAAGNGE  60
   61 SFRAERVAEV RQQMIEGAYR VDARSVAMRM IGTNV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.41
Match:	1rp3B
Description:	Cocrystal structure of the flagellar sigma/anti-sigma complex, Sigma-28/FlgM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.898156665835644	bayes_pls_golite062009
protein binding	0.114198899043901	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: