YRC Public Data Repository - Protein Structure Prediction

Protein:	CSRA_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSRA_GEOSL.

Description	E-value	Query Range	Subject Range
CSRA_DESAG - Carbon storage regulator homolog OS=Desulfovibrio alaskensis (strain G20) GN=csrA PE=3 SV=1	114.0	[0..1]	[78..1]
CSRA_GEOMG - Carbon storage regulator homolog OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)...	110.0	[0..1]	[78..1]
CSRA_GEOUR - Carbon storage regulator homolog OS=Geobacter uraniireducens (strain Rf4) GN=csrA PE=3 SV=1	105.0	[0..1]	[79..1]
CSRA_DESVH - Carbon storage regulator homolog OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIM... gi\|241878498, gi... - gi\|241909098\|ref\|ZP_04793652.1\| carbon storage regulator, CsrA [Desulfovibrio vulgaris RCH1], gi\|241... CSRA_DESVV - Carbon storage regulator homolog OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=csrA PE=3...	105.0	[0..1]	[78..1]
CSRA_PSYWF - Carbon storage regulator homolog OS=Psychrobacter sp. (strain PRwf-1) GN=csrA PE=3 SV=1	101.0	[0..1]	[62..1]
gi\|90331476, gi\|... - gi\|90416723\|ref\|ZP_01224653.1\| carbon storage regulator [marine gamma proteobacterium HTCC2207], gi\|... gi\|90416723\|ref\|... - carbon storage regulator [marine gamma proteobacterium HTCC2207]	101.0	[0..1]	[65..1]
gi\|227161929, gi... - gi\|227357819\|ref\|ZP_03842167.1\| carbon storage regulator [Proteus mirabilis ATCC 29906], gi\|22716192... CSRA_PROMI - Carbon storage regulator homolog OS=Proteus mirabilis GN=csrA PE=3 SV=1 CSRA_PROMH - Carbon storage regulator homolog OS=Proteus mirabilis (strain HI4320) GN=csrA PE=3 SV=1 gi\|226328740, gi... - gi\|226328740\|ref\|ZP_03804258.1\| hypothetical protein PROPEN_02640 [Proteus penneri ATCC 35198], gi\|2...	100.0	[0..1]	[61..1]
CSRA_SHEDO - Carbon storage regulator homolog OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 150...	100.0	[0..1]	[62..1]
CSRA_PSYCK - Carbon storage regulator homolog OS=Psychrobacter cryohalolentis (strain K5) GN=csrA PE=3 SV=1	100.0	[0..1]	[62..1]
gi\|88773955, gi\|... - gi\|88794830\|ref\|ZP_01110535.1\| carbon storage regulator [Alteromonas macleodii 'Deep ecotype'], gi\|8...	100.0	[0..1]	[55..31]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVLTRKMGE VVTIGDSIRI KVVEMKGNQV RLGIEAPNDM RIYREEIYIK VQRENQIAAS  60
   61 WSLADLEKAV TCLGADGKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.045757
Match:	1t3oA
Description:	Solution structure of CsrA, a bacterial carbon storage regulatory protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits