YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39998127, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998127, gi|....

Description	E-value	Query Range	Subject Range
gi\|120603163, gi... - gi\|120603163\|ref\|YP_967563.1\| flagellar protein FliS [Desulfovibrio vulgaris subsp. vulgaris DP4], g...	159.0	[0..1]	[121..1]
gi\|46448689, gi\|... - gi\|46579275\|ref\|YP_010083.1\| bifunctional flagellar protein FliS/hypothetical protein [Desulfovibrio...	158.0	[0..1]	[121..1]
gi\|83572532, gi\|... - gi\|83589618\|ref\|YP_429627.1\| flagellar protein FliS [Moorella thermoacetica ATCC 39073], gi\|83572532...	153.0	[0..1]	[137..3]
gi\|4981728, gi\|1... - gi\|4981728\|gb\|AAD36254.1\|AE001774_11 flagellar protein FliS [Thermotoga maritima MSB8], gi\|15643935\|... gi\|7444919 - pir\|\|F72286 flagellar protein FliS - Thermotoga maritima (strain MSB8)	153.0	[0..6]	[137..4]
gi\|89100628, gi\|... - gi\|89100628\|ref\|ZP_01173486.1\| flagellar protein FliS [Bacillus sp. NRRL B-14911], gi\|89084652\|gb\|EA...	152.0	[0..2]	[126..4]
FLIS_VIBCH - Flagellar protein fliS OS=Vibrio cholerae GN=fliS PE=3 SV=1 gi\|124122827, gi... - gi\|153801650\|ref\|ZP_01956236.1\| flagellar protein FliS [Vibrio cholerae MZO-3], gi\|124122827\|gb\|EAY4... gi\|126510463, gi... - gi\|153818968\|ref\|ZP_01971635.1\| flagellar protein FliS [Vibrio cholerae NCTC 8457], gi\|126510463\|gb\|... gi\|126519868, gi... - gi\|229511986\|ref\|ZP_04401465.1\| flagellar biosynthesis protein FliS [Vibrio cholerae B33], gi\|229351... gi\|227010151, gi... - gi\|227082263\|ref\|YP_002810814.1\| flagellar protein FliS [Vibrio cholerae M66-2], gi\|227010151\|gb\|ACP... gi\|254844929, gi... - gi\|75830327\|ref\|ZP_00759607.1\| COG1516: Flagellin-specific chaperone FliS [Vibrio cholerae MO10], gi... gi\|229355282, gi... - gi\|229507777\|ref\|ZP_04397282.1\| flagellar biosynthesis protein FliS [Vibrio cholerae BX 330286], gi\|... gi\|229513789, gi... - gi\|229513789\|ref\|ZP_04403251.1\| flagellar biosynthesis protein FliS [Vibrio cholerae TMA 21], gi\|229... gi\|116218029, gi... - gi\|75824658\|ref\|ZP_00754106.1\| COG1516: Flagellin-specific chaperone FliS [Vibrio cholerae RC385], g... gi\|229519122, gi... - gi\|229519122\|ref\|ZP_04408565.1\| flagellar biosynthesis protein FliS [Vibrio cholerae RC9], gi\|229343... gi\|75827441, gi\|... - gi\|75827441\|ref\|ZP_00756876.1\| COG1516: Flagellin-specific chaperone FliS [Vibrio cholerae O395], gi... gi\|229341016, gi... - gi\|229522091\|ref\|ZP_04411508.1\| flagellar biosynthesis protein FliS [Vibrio cholerae TM 11079-80], g... gi\|75816881, gi\|... - gi\|75816881\|ref\|ZP_00747339.1\| COG1516: Flagellin-specific chaperone FliS [Vibrio cholerae V52], gi\|... gi\|229528850, gi... - gi\|229528850\|ref\|ZP_04418240.1\| flagellar biosynthesis protein FliS [Vibrio cholerae 12129(1)], gi\|2... gi\|75818879, gi\|... - gi\|75818879\|ref\|ZP_00748994.1\| COG1516: Flagellin-specific chaperone FliS [Vibrio cholerae V51], gi\|... gi\|229369977, gi... - gi\|229607322\|ref\|YP_002877970.1\| flagellar biosynthesis protein FliS [Vibrio cholerae MJ-1236], gi\|2... gi\|197751280, gi... - gi\|254291375\|ref\|ZP_04962168.1\| flagellar protein FliS [Vibrio cholerae AM-19226], gi\|197751280\|ref\|... FLIS_VIBCH - Flagellar protein FliS OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=f... gi\|121549006, gi... - gi\|121586839\|ref\|ZP_01676621.1\| flagellar protein FliS [Vibrio cholerae 2740-80], gi\|121549006\|gb\|EA... gi\|153828630, gi... - gi\|153828630\|ref\|ZP_01981297.1\| flagellar protein FliS [Vibrio cholerae 623-39], gi\|148875901\|gb\|EDL... gi\|124116083, gi... - gi\|153213283\|ref\|ZP_01948695.1\| flagellar protein FliS [Vibrio cholerae 1587], gi\|124116083\|gb\|EAY34... gi\|149740760, gi... - gi\|153825609\|ref\|ZP_01978276.1\| flagellar protein FliS [Vibrio cholerae MZO-2], gi\|149740760\|gb\|EDM5... gi\|153223612, gi... - gi\|153223612\|ref\|ZP_01953966.1\| flagellar protein FliS [Vibrio cholerae MAK 757], gi\|124118078\|gb\|EA...	149.0	[0..1]	[129..1]
gi\|84377173, gi\|... - gi\|84388106\|ref\|ZP_00991002.1\| flagellar protein FliS [Vibrio splendidus 12B01], gi\|84377173\|gb\|EAP9...	147.0	[0..1]	[128..1]
gi\|113969620, gi... - gi\|82495234\|ref\|ZP_00880811.1\| Flagellar protein FliS [Shewanella sp. MR-4], gi\|82406737\|gb\|EAP47400...	147.0	[0..1]	[134..1]
gi\|218321837, gi... - gi\|218708818\|ref\|YP_002416439.1\| flagellar protein FliS [Vibrio splendidus LGP32], gi\|218321837\|emb\|... gi\|85836088, gi\|... - gi\|86146141\|ref\|ZP_01064467.1\| flagellar protein FliS [Vibrio sp. MED222], gi\|85836088\|gb\|EAQ54220.1...	147.0	[0..1]	[128..1]
gi\|196252226, gi... - gi\|196252226\|ref\|ZP_03150887.1\| flagellar protein FliS [Clostridium thermocellum DSM 4150], gi\|19619... gi\|67875291, gi\|... - gi\|67875291\|ref\|ZP_00504714.1\| Flagellar protein FliS [Clostridium thermocellum ATCC 27405], gi\|6785...	147.0	[0..1]	[130..3]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTPFNQYQN TQVGTASPEK ILIMLYDGAI NFSKIALERM EKKDLAGKGK YISKAQAIVS  60
   61 ELMNTLNHDV GGGIAQRLEQ LYIYVIDEYI NANINNSPRA LENAIRILTV LRDSWVEAID 120
  121 IWKRERDAVP PSVHQPGYVA GQAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.39794
Match:	1vh6A
Description:	Crystal structure of a flagellar protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.31438572337508	bayes_pls_golite062009
protein binding	0.977368420595996	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: