YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39998118, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	254 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998118, gi|....

Description	E-value	Query Range	Subject Range
gi\|67874822, gi\|... - gi\|67874822\|ref\|ZP_00504402.1\| MotA/TolQ/ExbB proton channel [Clostridium thermocellum ATCC 27405], ... gi\|196251578, gi... - gi\|196251578\|ref\|ZP_03150246.1\| MotA/TolQ/ExbB proton channel [Clostridium thermocellum DSM 4150], g...	219.0	[0..1]	[250..1]
gi\|78192937, gi\|... - gi\|78221682\|ref\|YP_383429.1\| MotA/TolQ/ExbB proton channel [Geobacter metallireducens GS-15], gi\|781...	217.0	[0..1]	[252..1]
gi\|88915280, gi\|... - gi\|88937977\|ref\|ZP_01143500.1\| chemotaxis MotA protein [Geobacter uraniumreducens Rf4], gi\|88915280\|...	216.0	[0..1]	[248..1]
gi\|23473354, gi\|... - gi\|78358628\|ref\|YP_390077.1\| chemotaxis protein MotA [Desulfovibrio desulfuricans subsp. desulfurica...	215.0	[0..1]	[253..1]
gi\|221563031, gi... - gi\|222053742\|ref\|YP_002536104.1\| MotA/TolQ/ExbB proton channel [Geobacter sp. FRC-32], gi\|221563031\|...	214.0	[0..1]	[248..1]
gi\|116122039, gi... - gi\|116329295\|ref\|YP_799015.1\| endoflagellar motor protein [Leptospira borgpetersenii serovar Hardjo-... gi\|116330098, gi... - gi\|116330098\|ref\|YP_799816.1\| endoflagellar motor protein [Leptospira borgpetersenii serovar Hardjo-...	212.0	[0..1]	[251..1]
gi\|24197542, gi\|... - gi\|24216276\|ref\|NP_713757.1\| motility protein A [Leptospira interrogans serovar Lai str. 56601], gi\|... gi\|45599755, gi\|... - gi\|45656520\|ref\|YP_000606.1\| motility protein A [Leptospira interrogans serovar Copenhageni str. Fio...	212.0	[0..1]	[251..1]
gi\|77685220, gi\|... - gi\|77685220\|ref\|ZP_00800627.1\| MotA/TolQ/ExbB proton channel [Alkaliphilus metalliredigenes QYMF], g...	210.0	[0..1]	[251..1]
gi\|189025950, gi... - gi\|189025950\|ref\|YP_001933722.1\| flagellar motor rotation protein [Treponema pallidum subsp. pallidu... MOTA_TREPA - Chemotaxis protein motA OS=Treponema pallidum GN=motA PE=1 SV=1 gi\|7447997 - pir\|\|A71292 probable flagellar motor rotation protein (motA) - syphilis spirochete MOTA_TREPA - Motility protein A OS=Treponema pallidum (strain Nichols) GN=motA PE=3 SV=1	208.0	[0..1]	[252..1]
gi\|89084379, gi\|... - gi\|89100892\|ref\|ZP_01173741.1\| flagellar motor protein [Bacillus sp. NRRL B-14911], gi\|89084379\|gb\|E...	208.0	[0..1]	[253..1]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIATIIGLV MGFGAVFGGA LLEGLHLTAL IQPTAAIIVL GGTFGAAFVS FPMKTIIGAA  60
   61 KDIKKVLMP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [70-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQNDPEKVIK DLIGYAAKAR RNGLISLEQE AQNVKDPFTK KGISLVVDGI DPQKLRETLE  60
   61 IEVTYYEEHA KQSAEFFEAA GGYAPTIGII GAVLGLIHVM GNLSDSSKLG AGIAVAFVAT 120
  121 IYGLMTANII CLPFGTKIKH GIKEELICKN MIIEGLIAIQ NGENPHFIEQ KLKAFLQHGA 180
  181 GDKKG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	20.161151
Match:	PF01618.7
Description:	No description for PF01618.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits