YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39998117, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998117, gi|....

Description	E-value	Query Range	Subject Range
gi\|78192938, gi\|... - gi\|78221683\|ref\|YP_383430.1\| flagellar protein [Geobacter metallireducens GS-15], gi\|78192938\|gb\|ABB...	133.0	[0..1]	[86..1]
gi\|24216277, gi\|... - gi\|24216277\|ref\|NP_713758.1\| flagellar protein D [Leptospira interrogans serovar Lai str. 56601], gi... gi\|45599754, gi\|... - gi\|45656519\|ref\|YP_000605.1\| flagellar protein [Leptospira interrogans serovar Copenhageni str. Fioc...	112.0	[0..1]	[72..1]
gi\|116122040, gi... - gi\|116329296\|ref\|YP_799016.1\| endoflagellar protein [Leptospira borgpetersenii serovar Hardjo-bovis ... gi\|116330097, gi... - gi\|116330097\|ref\|YP_799815.1\| endoflagellar protein [Leptospira borgpetersenii serovar Hardjo-bovis ...	107.0	[0..1]	[72..1]
gi\|7462780 - pir\|\|A72347 hypothetical protein TM0675 - Thermotoga maritima (strain MSB8) gi\|15643439, gi\|... - gi\|4981198\|gb\|AAD35758.1\|AE001740_4 flagellar protein, putative [Thermotoga maritima MSB8], gi\|15643...	103.0	[0..1]	[59..1]
gi\|221563030, gi... - gi\|222053741\|ref\|YP_002536103.1\| flagellar FlbD family protein [Geobacter sp. FRC-32], gi\|221563030\|...	102.0	[0..1]	[85..1]
gi\|68055851, gi\|... - gi\|68055851\|ref\|ZP_00539991.1\| Flagellar [Exiguobacterium sibiricum 255-15], gi\|68007574\|gb\|EAM86826...	101.0	[0..1]	[76..1]
gi\|88937976, gi\|... - gi\|88937976\|ref\|ZP_01143499.1\| flagellar protein FlbD, putative [Geobacter uraniumreducens Rf4], gi\|...	100.0	[0..1]	[85..1]
gi\|3323027, gi\|1... - gi\|3323027\|gb\|AAC65691.1\| flagellar protein (flbD) [Treponema pallidum subsp. pallidum str. Nichols]... gi\|7521072 - pir\|\|B71292 probable flagellar protein (flbD) - syphilis spirochete gi\|2196894 - gi\|2196894\|gb\|AAB61252.1\| Orf4 [Treponema pallidum] gi\|189025951, gi... - gi\|189025951\|ref\|YP_001933723.1\| flagellar protein [Treponema pallidum subsp. pallidum SS14], gi\|189...	98.0	[0..1]	[59..1]
gi\|1399284 - gi\|1399284\|gb\|AAB03249.1\| orf4; initiates with GTG	97.0	[0..1]	[63..1]
gi\|4426944 - gi\|4426944\|gb\|AAD20618.1\| unknown [Treponema denticola] gi\|41819537, gi\|... - gi\|42528267\|ref\|NP_973365.1\| flagellar protein-related protein [Treponema denticola ATCC 35405], gi\|...	96.0	[0..1]	[63..1]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRLTRLDGD VFFVNPDLIE AIEETPDTHI VLSNGRRYLV IEKTDAIVAR IISFKSSVMK  60
   61 RALGGHGRKY LRRKMEGSYL PRCPLKPGHN TD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	20.148742
Match:	PF06289.2
Description:	No description for PF06289.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.531	N/A	N/A	d.50.1	dsRNA-binding domain-like
View	Download	0.506	N/A	N/A	a.77.1	DEATH domain
View	Download	0.506	N/A	N/A	a.77.1	DEATH domain
View	Download	0.498	N/A	N/A	d.50.1	dsRNA-binding domain-like
View	Download	0.472	N/A	N/A	d.50.1	dsRNA-binding domain-like
View	Download	0.450	N/A	N/A	d.50.1	dsRNA-binding domain-like
View	Download	0.430	N/A	N/A	a.77.1	DEATH domain
View	Download	0.346	N/A	N/A	a.77.1	DEATH domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits