YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39998101, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	172 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998101, gi|....

Description	E-value	Query Range	Subject Range
gi\|68346070, gi\|... - gi\|70731771\|ref\|YP_261513.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer...	243.0	[0..6]	[172..4]
gi\|21109520, gi\|... - gi\|21243913\|ref\|NP_643495.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer...	241.0	[0..5]	[172..3]
gi\|82616235 - gi\|82616235\|emb\|CAJ11284.1\| ATP/GTP-binding site motif A (P-loop):Cobalbumin biosynthesis enzyme [Br... gi\|254710369 - gi\|254710369\|ref\|ZP_05172180.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltrans... gi\|254730546 - gi\|254730546\|ref\|ZP_05189124.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltrans... gi\|254704584 - gi\|254704584\|ref\|ZP_05166412.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltrans... gi\|254706522 - gi\|254706522\|ref\|ZP_05168350.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltrans... gi\|163674293, gi... - gi\|163843570\|ref\|YP_001627974.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltran... gi\|189024448, gi... - gi\|189024448\|ref\|YP_001935216.1\| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19], gi\|18... gi\|82700134 - gi\|82700134\|ref\|YP_414708.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer... gi\|62196344, gi\|... - gi\|62290212\|ref\|YP_222005.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer... gi\|161336070, gi... - gi\|161619259\|ref\|YP_001593146.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltran... gi\|17982625, gi\|... - gi\|17986976\|ref\|NP_539610.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer... gi\|225641164, gi... - gi\|225852799\|ref\|YP_002733032.1\| Bifunctional adenosylcobalamin biosynthesis protein cobP [Brucella ... gi\|25322452 - pir\|\|AG3338 cobinamide kinase / cobinamide phosphate guanylyltransferase (EC 2.7.7.-) (EC 2.7.1.-) [... gi\|237815721, gi... - gi\|237815721\|ref\|ZP_04594718.1\| Bifunctional adenosylcobalamin biosynthesis protein cobP [Brucella a... gi\|23502184, gi\|... - gi\|23502184\|ref\|NP_698311.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer... gi\|148559951, gi... - gi\|148559951\|ref\|YP_001259221.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltran... gi\|225617778, gi... - gi\|225627773\|ref\|ZP_03785810.1\| Bifunctional adenosylcobalamin biosynthesis protein cobP [Brucella c... gi\|254697656 - gi\|254697656\|ref\|ZP_05159484.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltrans... gi\|254702042 - gi\|254702042\|ref\|ZP_05163870.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltrans... gi\|254689518 - gi\|254689518\|ref\|ZP_05152772.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltrans... gi\|254694006 - gi\|254694006\|ref\|ZP_05155834.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltrans...	239.0	[0..2]	[172..5]
gi\|82714283, gi\|... - gi\|82738624\|ref\|ZP_00901452.1\| cobinamide kinase [Pseudomonas putida F1], gi\|82714283\|gb\|EAP49369.1\|... gi\|24983166, gi\|... - gi\|26988410\|ref\|NP_743835.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer... tr\|I7B398\|I7B398... - Adenosylcobinamide OS=Pseudomonas putida (strain DOT-T1E) GN=cobU PE=4 SV=1	239.0	[0..6]	[172..4]
gi\|21114277, gi\|... - gi\|21232490\|ref\|NP_638407.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer... gi\|66767426, gi\|... - gi\|66767426\|ref\|YP_242188.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer... gi\|188990531, gi... - gi\|188990531\|ref\|YP_001902541.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltran...	238.0	[0..6]	[172..4]
gi\|84366837, gi\|... - gi\|84622897\|ref\|YP_450269.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer... gi\|122879088, gi... - gi\|77760591\|ref\|YP_199989.2\| adenosylcobinamide kinase [Xanthomonas oryzae pv. oryzae KACC10331], gi...	237.0	[0..5]	[172..3]
gi\|78037302, gi\|... - gi\|78048872\|ref\|YP_365047.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer...	237.0	[0..6]	[172..4]
gi\|25322439 - pir\|\|D97070 adenosyl cobinamide kinase/adenosyl cobinamide phosphate [imported] - Clostridium acetob... gi\|15024320, gi\|... - gi\|15894662\|ref\|NP_348011.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer...	237.0	[0..1]	[172..1]
tr\|Q885W7\|Q885W7... - Cobinamide kinase/cobinamide phosphate guanylyltransferase OS=Pseudomonas syringae pv. tomato (strai... gi\|28852159, gi\|... - gi\|28868920\|ref\|NP_791539.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer...	236.0	[0..6]	[172..4]

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Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQIIFLTGG ARSGKSRLAE ELATRRGTPL GYLATGSAGD GEMAERIARH RERRGDAWTT  60
   61 IEEPLALAES LAAHDGRFAA ILVDCVTLWL SNLLFSLDDP ARVLKEVELL TRTFSSLRTP 120
  121 LIIVSNEVGM GIVPENRLAR QFRDLAGEAN ERIAAAADEV YVTFSGLPLR LK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.522879
Match:	1c9kA
Description:	Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009
cob(I)yrinic acid a,c-diamide adenosyltransferase activity	0.0388346549390599	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: