YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39985044, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39985044, gi|....

Description	E-value	Query Range	Subject Range
gi\|90572875, gi\|... - gi\|90572875\|ref\|ZP_01229397.1\| hypothetical protein CdifQ_02003782 [Clostridium difficile QCD-32g58]...	205.0	[0..1]	[244..1]
gi\|90413241, gi\|... - gi\|90413241\|ref\|ZP_01221236.1\| cobalamin synthase [Photobacterium profundum 3TCK], gi\|90325793\|gb\|EA...	201.0	[0..2]	[244..30]
COBS_CLOTE - Cobalamin synthase OS=Clostridium tetani GN=cobS PE=3 SV=1 COBS_CLOTE - Adenosylcobinamide-GDP ribazoletransferase OS=Clostridium tetani (strain Massachusetts / E88) GN=cob...	199.0	[0..4]	[244..7]
COBS_VIBPA - Adenosylcobinamide-GDP ribazoletransferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 22... COBS_VIBPA - Cobalamin synthase OS=Vibrio parahaemolyticus GN=cobS PE=3 SV=1	197.0	[0..1]	[245..16]
gi\|46912802, gi\|... - gi\|54308374\|ref\|YP_129394.1\| cobalamin synthase [Photobacterium profundum SS9], gi\|46912802\|emb\|CAG1...	195.0	[0..2]	[244..30]
gi\|77967997, gi\|... - gi\|78067252\|ref\|YP_370021.1\| cobalamin synthase [Burkholderia sp. 383], gi\|77967997\|gb\|ABB09377.1\| c...	193.0	[0..1]	[243..5]
gi\|71845412, gi\|... - gi\|71905791\|ref\|YP_283378.1\| cobalamin synthase [Dechloromonas aromatica RCB], gi\|71845412\|gb\|AAZ449...	188.0	[0..1]	[242..6]
gi\|78221689, gi\|... - gi\|78221689\|ref\|YP_383436.1\| cobalamin-5'-phosphate synthase [Geobacter metallireducens GS-15], gi\|7...	188.0	[0..2]	[245..24]
COBS_LEPIC - Adenosylcobinamide-GDP ribazoletransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae s... COBS_LEPIN - Adenosylcobinamide-GDP ribazoletransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae s... COBS_LEPIN - Cobalamin synthase OS=Leptospira interrogans GN=cobS PE=3 SV=1 COBS_LEPIC - Cobalamin synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=co...	188.0	[0..4]	[242..11]
gi\|89073413, gi\|... - gi\|89073413\|ref\|ZP_01159937.1\| cobalamin synthase [Photobacterium sp. SKA34], gi\|89050900\|gb\|EAR5637...	187.0	[0..2]	[244..23]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLYFIALQF LTVVPLPFRL RWDERALGRS MAFFPLAGLT LGTLLAGADM LFAALVPRPV  60
   61 SDLLLVALLA GVTGALHLDG LADVCDGLAA RGGRERFLAV MKDPRVGAVG VVGLVLGLAL 120
  121 KYQALLAVPD DLKRQALLLF PAVARYAQVQ MTVGANRARQ DGLGAAFIAG TGMFQLVTAG 180
  181 TITAVAAWLL LGPAGMAVLA ASVLFTGGFR WWFHRHLGGV TGDVIGCASE LNEILCLLVI 240
  241 LALHRG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits