YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39985038, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	251 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39985038, gi|....

Description	E-value	Query Range	Subject Range
gi\|169347090, gi... - gi\|169347090\|ref\|ZP_02866032.1\| cobalt ABC transporter, permease protein [Clostridium perfringens C ... gi\|182381146, gi... - gi\|182381146\|gb\|EDT78625.1\| cobalt ABC transporter, permease protein [Clostridium perfringens NCTC 8... gi\|168211872, gi... - gi\|170710154\|gb\|EDT22336.1\| cobalt ABC transporter, permease protein [Clostridium perfringens B str.... gi\|18311354, gi\|... - gi\|18311354\|ref\|NP_563288.1\| hypothetical protein CPE2372 [Clostridium perfringens str. 13], gi\|1814... gi\|110674822, gi... - gi\|110800175\|ref\|YP_697061.1\| cobalt ABC transporter, permease protein [Clostridium perfringens ATCC...	167.0	[0..4]	[250..7]
gi\|110683556, gi... - gi\|110803055\|ref\|YP_699631.1\| ABC transporter permease protein [Clostridium perfringens SM101], gi\|1...	165.0	[0..4]	[250..7]
gi\|206732814, gi... - gi\|206972240\|ref\|ZP_03233187.1\| cobalt transport protein [Bacillus cereus AH1134], gi\|206732814\|gb\|E... gi\|29893950, gi\|... - gi\|30018410\|ref\|NP_830041.1\| cobalt transport protein cbiQ [Bacillus cereus ATCC 14579], gi\|29893950...	165.0	[0..3]	[251..5]
gi\|218544229, gi... - gi\|218895276\|ref\|YP_002443687.1\| cobalt transport protein [Bacillus cereus G9842], gi\|218544229\|gb\|A... gi\|75764617, gi\|... - gi\|75764617\|ref\|ZP_00744061.1\| Cobalt transport protein cbiQ [Bacillus thuringiensis serovar israele...	164.0	[0..3]	[251..5]
gi\|227896805, gi... - gi\|227896805\|ref\|ZP_04014610.1\| ABC superfamily ATP binding cassette transporter, membrane protein [... gi\|254556053, gi... - gi\|254556053\|ref\|YP_003062470.1\| ABC transporter, permease protein [Lactobacillus plantarum JDM1], g... gi\|28377869, gi\|... - gi\|28377869\|ref\|NP_784761.1\| ABC transporter, permease protein [Lactobacillus plantarum WCFS1], gi\|2...	164.0	[0..3]	[250..6]
gi\|218901346, gi... - gi\|218901346\|ref\|YP_002449180.1\| cobalt transport protein [Bacillus cereus AH820], gi\|218535401\|gb\|A... gi\|30260332, gi\|... - gi\|30260332\|ref\|NP_842709.1\| cobalt transport protein [Bacillus anthracis str. Ames], gi\|30253653\|gb... gi\|47525397, gi\|... - gi\|47525397\|ref\|YP_016746.1\| cobalt transport protein [Bacillus anthracis str. 'Ames Ancestor'], gi\|... gi\|21398099 - ref\|NP_654084.1\| CbiQ, Cobalt transport protein [Bacillus anthracis str. A2012] gi\|225788254, gi... - gi\|225862193\|ref\|YP_002747571.1\| cobalt transport protein [Bacillus cereus 03BB102], gi\|225788254\|gb... gi\|118415134, gi... - gi\|118475909\|ref\|YP_893060.1\| cobalt ABC transporter, permease component [Bacillus thuringiensis str... gi\|227002880, gi... - gi\|227812814\|ref\|YP_002812823.1\| cobalt transport protein [Bacillus anthracis str. CDC 684], gi\|2270... gi\|254726280 - gi\|254726280\|ref\|ZP_05188062.1\| cobalt transport protein [Bacillus anthracis str. A1055] gi\|254735285 - gi\|254735285\|ref\|ZP_05192993.1\| cobalt transport protein [Bacillus anthracis str. Western North Amer... gi\|229603881, gi... - gi\|229603881\|ref\|YP_002864792.1\| cobalt transport protein [Bacillus anthracis str. A0248], gi\|229268... gi\|254686640 - gi\|254686640\|ref\|ZP_05150499.1\| cobalt transport protein [Bacillus anthracis str. CNEVA-9066] gi\|52145078, gi\|... - gi\|52145078\|ref\|YP_081751.1\| cobalt ABC transporter permease [Bacillus cereus E33L], gi\|51978547\|gb\|... gi\|254756840 - gi\|254756840\|ref\|ZP_05208868.1\| cobalt transport protein [Bacillus anthracis str. Australia 94] gi\|49183175, gi\|... - gi\|49183175\|ref\|YP_026427.1\| cobalt transport protein [Bacillus anthracis str. Sterne], gi\|49177102\|... gi\|254739477 - gi\|254739477\|ref\|ZP_05197175.1\| cobalt transport protein [Bacillus anthracis str. Kruger B] gi\|49481686, gi\|... - gi\|49481686\|ref\|YP_034492.1\| cobalt ABC transporter permease [Bacillus thuringiensis serovar konkuki... gi\|254755531 - gi\|254755531\|ref\|ZP_05207565.1\| cobalt transport protein [Bacillus anthracis str. Vollum] gi\|196041150, gi... - gi\|196041150\|ref\|ZP_03108446.1\| cobalt transport protein [Bacillus cereus NVH0597-99], gi\|196028085\|... gi\|196022927, gi... - gi\|196046182\|ref\|ZP_03113409.1\| cobalt transport protein [Bacillus cereus 03BB108], gi\|196022927\|gb\|... gi\|190567400, gi... - gi\|190567400\|ref\|ZP_03020314.1\| cobalt transport protein [Bacillus anthracis Tsiankovskii-I], gi\|190... gi\|196036006, gi... - gi\|196036006\|ref\|ZP_03103407.1\| cobalt transport protein [Bacillus cereus W], gi\|195991375\|gb\|EDX553... gi\|170125624, gi... - gi\|170709468\|ref\|ZP_02899871.1\| cobalt transport protein [Bacillus anthracis str. A0389], gi\|1701256... gi\|172079842, gi... - gi\|177656194\|ref\|ZP_02937175.1\| cobalt transport protein [Bacillus anthracis str. A0174], gi\|1720798... gi\|167642073, gi... - gi\|167642073\|ref\|ZP_02400297.1\| cobalt transport protein [Bacillus anthracis str. A0193], gi\|1675099... gi\|170689679, gi... - gi\|170689679\|ref\|ZP_02880857.1\| cobalt transport protein [Bacillus anthracis str. A0465], gi\|1706663... gi\|164710914, gi... - gi\|165873346\|ref\|ZP_02217947.1\| cobalt transport protein [Bacillus anthracis str. A0488], gi\|1647109...	164.0	[0..3]	[251..5]
gi\|25308387 - pir\|\|E97281 probable permease (Cobalt permease subfamily) [imported] - Clostridium acetobutylicum gi\|15896351, gi\|... - gi\|15896351\|ref\|NP_349700.1\| cobalt subfamily permease [Clostridium acetobutylicum ATCC 824], gi\|150...	163.0	[0..4]	[241..7]
gi\|65317586 - gi\|65317586\|ref\|ZP_00390545.1\| COG0619: ABC-type cobalt transport system, permease component CbiQ an...	162.0	[0..3]	[251..2]
gi\|206743750, gi... - gi\|206978037\|ref\|ZP_03238922.1\| cobalt transport protein [Bacillus cereus H3081.97], gi\|206743750\|gb... gi\|42779222, gi\|... - gi\|42779222\|ref\|NP_976469.1\| cobalt transport protein [Bacillus cereus ATCC 10987], gi\|42735137\|gb\|A... gi\|221237959, gi... - gi\|222093911\|ref\|YP_002527961.1\| ABC transporter, permease; possible cobalt transport protein [Bacil... gi\|217063698, gi... - gi\|217957716\|ref\|YP_002336260.1\| cobalt transport protein [Bacillus cereus AH187], gi\|217063698\|gb\|A...	162.0	[0..3]	[251..5]
gi\|227555886, gi... - gi\|227555886\|ref\|ZP_03985933.1\| ABC superfamily ATP binding cassette transporter, membrane protein [... gi\|29342341, gi\|... - gi\|29374883\|ref\|NP_814036.1\| cobalt transport family protein [Enterococcus faecalis V583], gi\|293423...	162.0	[0..3]	[247..6]

Back

Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHVLSASPA DHPLSRLDPR VKLLTAGALL AMVISCTGGL FPLLAAILSL GIVVSLGVPL  60
   61 RLILLRFAEP AFIAAVVLLL KLF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [84-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSGVTPLFTL QLPWLELTAY REGLREGLLI AGRIAAAVSV VSAVGFSSSF TDLMAALAWL  60
   61 RVPRSFIEVA LFAWRYLFLL LDDAQVIHAA QRNRLGYSGL RRGMRSFGTL AGALVLKAFD 120
  121 NSQTITTAMV QRGYDGNLPL FRHRPFRPAE VALSALFVVA MGTLWGMQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.870	N/A	N/A	f.17.1	F1F0 ATP synthase subunit C
View	Download	0.835	N/A	N/A	f.31.1	Photosystem I reaction center subunit XI, PsaL
View	Download	0.816	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.781	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.769	N/A	N/A	a.47.2	t-snare proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits