YRC Public Data Repository - Protein Structure Prediction

Protein:	Y3001_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y3001_GEOSL.

Description	E-value	Query Range	Subject Range
gi\|13183171 - gi\|13183171\|gb\|AAK15086.1\|AF239996_5 DppF [Thermococcus peptonophilus]	316.0	[0..2]	[278..7]
gi\|77995933, gi\|... - gi\|78043818\|ref\|YP_361158.1\| peptide ABC transporter, ATP-binding protein [Carboxydothermus hydrogen...	314.0	[0..2]	[277..5]
gi\|56908581, gi\|... - gi\|56962344\|ref\|YP_174069.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus clausii KSM-...	314.0	[0..2]	[275..41]
gi\|146296065, gi... - gi\|82500758\|ref\|ZP_00886157.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	312.0	[0..1]	[276..4]
gi\|20515603, gi\|... - gi\|20807110\|ref\|NP_622281.1\| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase compone... gi\|20807110 - gi\|20807110\|ref\|NP_622281.1\| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase compone...	312.0	[0..1]	[276..6]
gi\|119720083, gi... - gi\|119720083\|ref\|YP_920578.1\| ABC transporter related [Thermofilum pendens Hrk 5], gi\|119525203\|gb\|A...	311.0	[0..1]	[253..2]
gi\|89100170, gi\|... - gi\|89100170\|ref\|ZP_01173038.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus sp. NRRL B...	310.0	[0..1]	[277..12]
gi\|7442538 - pir\|\|G71014 probable dipeptide transport ATP-binding protein dppF - Pyrococcus horikoshii gi\|3257836, gi\|1... - gi\|3257836\|dbj\|BAA30519.1\| 329aa long hypothetical dipeptide transport ATP-binding protein dppF [Pyr...	309.0	[0..2]	[278..8]
gi\|18893529, gi\|... - gi\|18977784\|ref\|NP_579141.1\| dipeptide transport ATP-binding protein [Pyrococcus furiosus DSM 3638],...	309.0	[0..1]	[278..7]

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Predicted Domain #1

Region A:
Residues: [1-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFSVDLKAY AYPDGTVALS DIRFQVARGE FCGILGSNGS GKTTLLKIMD GLIREYDGSV  60
   61 LLDGRDVRSL QPKDIYRTVG LVFQNPDDQL FAHTVFEDVA FGPRNMGFAE AEVKARVERA 120
  121 LEAVDLAGAA AKQIHHLSYG QKKRACIAGL LAMGHEVLLM DEPTAGLDPM GEYRMMELLT 180
  181 RLNRQEGVTI VMATHSVDLV PLFLHRLYIL SRGRIVRGGP PEEVFTAPAE MESVKLRLPH 240
  241 IAELIHRLKH EDGVPFRRTP LTIGEARREI MELMETTRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.0
Match:	1z47A
Description:	Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits